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f602bf1
Add HITL finetuning test data generation infrastructure
davidackerman Feb 9, 2026
fd79e46
Add LoRA wrapper and CorrectionDataset for HITL finetuning
davidackerman Feb 9, 2026
7069780
Add LoRA training loop and CLI for HITL finetuning
davidackerman Feb 9, 2026
a2b7a92
Fix LoRA wrapper for Sequential models and add comprehensive document…
davidackerman Feb 9, 2026
dee0d52
Complete HITL finetuning pipeline with full component validation
davidackerman Feb 9, 2026
5b1def4
Fix zarr structure for Neuroglancer/OME-NGFF compatibility
davidackerman Feb 9, 2026
598d494
Fix dataset to handle mismatched raw/mask sizes
davidackerman Feb 9, 2026
f2e7667
Disable patching to use full-size corrections for training
davidackerman Feb 9, 2026
1e1e89c
Fix CLI to handle None patch_shape
davidackerman Feb 9, 2026
6af57d8
Disable spatial augmentation for mismatched input/output sizes
davidackerman Feb 9, 2026
d6d59f8
Add mito correction generator with fly_organelles model
davidackerman Feb 11, 2026
fd778bb
Add channel selection and logging for LoRA finetuning
davidackerman Feb 11, 2026
f27f3be
Add diagnostic tools for analyzing finetuning quality
davidackerman Feb 11, 2026
6b4e9e8
Document LoRA finetuning workflow with detailed walkthrough
davidackerman Feb 11, 2026
d879a6a
Fix normalization pipeline and add sparse annotation support
davidackerman Feb 11, 2026
e2a2b87
Add utility scripts for sparse annotation workflow
davidackerman Feb 11, 2026
c347bae
Add MinIO hosting scripts for Neuroglancer annotations
davidackerman Feb 12, 2026
19e4285
Remove unnecessary HTTP and legacy MinIO scripts
davidackerman Feb 12, 2026
343abbe
Add finetune annotation crop viewer integration
davidackerman Feb 12, 2026
e46e0b9
Add bidirectional MinIO annotation syncing and improve finetuning wor…
davidackerman Feb 12, 2026
0c1876e
Update finetuning documentation with dashboard workflow
davidackerman Feb 12, 2026
82f704d
Improve finetuning: fix gradient accumulation bug, add live log strea…
davidackerman Feb 13, 2026
dfc3380
Add finetuning job management system and dashboard integration
davidackerman Feb 13, 2026
8aee588
Add auto-serve inference after finetuning and iterative training on s…
davidackerman Feb 14, 2026
a8505e1
Add auto-serve status display and restart training UI to finetune tab
davidackerman Feb 14, 2026
dc1713e
Fix dark mode styling for modals, form controls, labels, and muted text
davidackerman Feb 14, 2026
48689c1
Fix chunk boundary bug in log marker detection for neuroglancer layer…
davidackerman Feb 14, 2026
1c4323e
Filter noisy debug and werkzeug lines from training log stream
davidackerman Feb 14, 2026
c268747
Fix restart layer update: run iteration check every monitor cycle
davidackerman Feb 14, 2026
923ef9e
Fix training collapse and add MSE loss with label smoothing
davidackerman Feb 14, 2026
0ec9965
Clamp dataloader batch size to dataset size
davidackerman Feb 14, 2026
2fa852e
Add margin loss, teacher distillation, and expanded training UI controls
davidackerman Feb 14, 2026
2d89327
Add class balancing option to prevent foreground overprediction
davidackerman Feb 14, 2026
c828a75
Fix duplicate log lines by removing redundant file write
davidackerman Feb 14, 2026
510b4df
Fix MinIO startup failure when console port is already in use
davidackerman Feb 15, 2026
076ee62
Add GPU queue selection to finetuning UI
davidackerman Feb 15, 2026
4fa99c5
Fix delayed log streaming by disabling pipe buffering
davidackerman Feb 15, 2026
f7cc402
Save only LoRA weights in checkpoints instead of full model
davidackerman Feb 15, 2026
e4909ab
Improve restart control path and CLI logging behavior
davidackerman Feb 15, 2026
9ef0be7
Speed up finetune dashboard log streaming and restart UX
davidackerman Feb 15, 2026
f9e19d1
Add model load timing logs and fs visibility probe tool
davidackerman Feb 15, 2026
af06fff
Update finetune progress UI from live SSE epoch/loss logs
davidackerman Feb 15, 2026
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11 changes: 10 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -162,4 +162,13 @@ cython_debug/
#.idea/

# Misc
.vscode/
.vscode/

# Project-specific
ignore/
*.zarr/
.claude/
test_corrections.zarr/
correction_slices/
corrections/
output/
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