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Releases: jengweitjiu/STRATA

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v0.1.0

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@jengweitjiu jengweitjiu released this 24 Feb 03:45
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STRATA v0.1.0 — Initial release

Spatial Transcription-factor Regulatory Architecture of Tissue Analysis.

  • Layer 1: Continuous regulon fields from Xenium transcript coordinates
  • Layer 2: Coupling tensor quantifying local co-regulation geometry
  • Layer 3: Regulon Stability Index from Jacobian SVD
  • Conjecture 5.1 validated: phase boundaries track tissue architecture (r=0.32, r=0.51)
  • Melanoma coupling homogenization discovery (variance ↓28%)
  • Parameter sensitivity: robust across all 12 BW × δ combinations
  • Complete reproducible notebook (Colab, T4 GPU, ~20s runtime)

Data: 10x Genomics Xenium Human Skin Melanoma (382 genes, 13.7M transcripts, CC BY 4.0)