Repository navigation
Dev bowtie2 - #73
Closed
jfallmann wants to merge 4 commits into
Closed
Dev bowtie2#73jfallmann wants to merge 4 commits into
jfallmann wants to merge 4 commits into
Conversation
… and overrides global setting, e.g. in case of quantseq with UMIs in R2 where R2 should be discarded before mapping/quantification. Also added bowtie2 as extra mapping tool and cleaned up
…d to create size-factor normalized output alongside RUV corrected output
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Bowtie 2 support and more faingrained control over DE analysis, fixes in spike-in normalization, additional output