Hi there
I was just attempting to use batalign. Install went ok as far as I can see (although it ignored the local path I gave through the --prefix option. typing make install copied most files over to that directory, but not the batalign file.
Unfortunately there is not fq.gz support, so I extracted my files and tried the program. I now got an segmentation fault. Any idea about this?
~/programs/batindel/bin/batalign: line 29: 36631 Segmentation fault (core dumped) $DIR/penguin $CMDLINE
my command was
batalign -g ~/genome/LG.fa -q ~/reads/sample.R1.fastq -q ~/reads/sample.R2.fastq -o batalign_genome_sample.sam --threads 40
indexing seemed to work and the identical files work with bwa-mem.
Hi there
I was just attempting to use batalign. Install went ok as far as I can see (although it ignored the local path I gave through the --prefix option. typing make install copied most files over to that directory, but not the batalign file.
Unfortunately there is not fq.gz support, so I extracted my files and tried the program. I now got an segmentation fault. Any idea about this?
~/programs/batindel/bin/batalign: line 29: 36631 Segmentation fault (core dumped) $DIR/penguin $CMDLINE
my command was
batalign -g ~/genome/LG.fa -q ~/reads/sample.R1.fastq -q ~/reads/sample.R2.fastq -o batalign_genome_sample.sam --threads 40
indexing seemed to work and the identical files work with bwa-mem.