AMIA 2025 Publications & Data Repositories

This repository serves as a landing page for data resources, official source code repositories, and publication links associated with my AMIA 2025 Fall Symposium paper submissions.

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PVLens: Enhancing Pharmacovigilance Through Automated Label Extraction

AMIA Annual Symposium Proceedings (2025)
Presented at the AMIA 2025 Fall Symposium, Atlanta, GA

📄 Paper

• Preprint (arXiv):
  https://arxiv.org/abs/2503.20639

• Final accepted version:
  https://javastats.com/publications/amia_2025_painter_pvlens.pdf

📚 BibTeX

@article{pvlens2025,
  author    = {Painter, J. L. and Powell, G. E. and Bate, A.},
  title     = {PVLens: Enhancing pharmacovigilance through automated label extraction},
  journal   = {AMIA Annual Symposium Proceedings},
  publisher = {AMIA},
  volume    = {2025},
  month     = {11},
  address   = {Atlanta, GA},
  doi       = {10.48550/arXiv.2503.20639}
}

💻 Source Code

The full, maintained implementation is available from the official GitHub repository:

https://github.com/GSK-Global-Safety/pvlens

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Ontology-based Semantic Similarity Measures for Clustering Medical Concepts in Drug Safety

AMIA Annual Symposium Proceedings (2025)
Presented at the AMIA 2025 Fall Symposium, Atlanta, GA

📄 Paper

• Preprint (arXiv):
  https://arxiv.org/abs/2503.20639

• Final accepted version:
  https://javastats.com/publications/amia_2025_painter_pvlens.pdf

📚 BibTeX

@article{ontossm2025,
  author    = {Painter, J. L. and Haguinet, F. and Powell, G. E. and Bate, A.},
  title     = {Ontology-based Semantic Similarity Measures for Clustering Medical Concepts in Drug Safety},
  journal   = {AMIA Annual Symposium Proceedings},
  publisher = {AMIA},
  volume    = {2025},
  month     = {11},
  address   = {Atlanta, GA},
  doi       = {10.48550/arXiv.2503.20737}
}

💻 Source Code

The reference implementation and evaluation framework are available from the official GitHub repository:

https://github.com/GSK-Global-Safety/semantic-similarity