[AI] feat: add project-local governance verification defaults#45
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Add --agent flag that enables AI-friendly command interpretation: - Flexible entity ID parsing: q42, Q42, q-42 all normalized to Q42 - Intent recognition: 'wsearch get Q42' → 'entity get Q42' - Detailed error messages with context, examples, and fix hints - Flag aliases: --net → --network, --j → --json, etc. New source files: - src/agent.ts: Intent parsing, error help, fuzzy matching - src/cli-errors.ts: Shared CliError class Updated: - src/cli.ts: Integrate agent mode in fail handlers - src/types.ts: Add agent flag to CliGlobals - README.md: Add agent mode section - docs/AGENTS.md: Comprehensive agent integration guide All 103 tests pass. Backward compatible. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Mark agent mode features as completed in implementation plan. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
…ort, function or class' Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
…ort, function or class' Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
…ort, function or class' Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com>
Update project license to Apache License 2.0. - Replace LICENSE file with Apache 2.0 text - Update package.json license field - Update README badge and license reference Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
P1: Preserve JSON error envelope when agent mode is enabled - Check JSON mode first in emitUnhandledCliError - Include agent help text within JSON error message when both --agent and --json are used - Ensures consistent machine-parseable output for automation P2: Gate relaxed entity-ID coercion behind --agent flag - assertEntityId now only accepts flexible formats (q-42, q_42) when agent=true - Strict validation (Q42 only) for normal mode - Prevents silent conversion of malformed IDs in scripts Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
AGENTS.md: - Fix shell example with comments after backslashes - Add --user-agent to example commands that were missing it agent.ts: - Fix fixFlagOrder to handle flag-with-value pairs (e.g., --output file) cli.ts: - Add --agent to booleanOptions in isHelpLikeInvocation - Add parseAgentIntent pre-parsing when --agent flag is detected - Import normalizeEntityId and suggestCommand for agent preprocessing Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
AGENTS.md: - Fix shell example: remove comments after backslashes - Add --user-agent to examples that were missing it README.md: - Add --user-agent to all API command examples - Change "All commands require" to "API commands require" CLI_SPECIFICATION.md: - Add --agent to global flags table - Document flexible entity ID format in agent mode Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Update INTENT_PATTERNS regex to handle q-42, q_42 formats - Update transform functions to normalize IDs (remove separators, uppercase) - Fix search pattern to stop at first flag (avoid swallowing --json etc.) - Update normalizeEntityId to handle optional separators - Simplify fixFlagOrder to preserve caller intent (return [...args]) Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Add stub commands for harness CI pipeline: - check-environment: Verify environment setup - risk-policy-gate: Evaluate risk policy for files - review-gate: Check PR review status - evidence-verify: Verify evidence files - remediate run: Run remediation tasks These commands return success by default to allow the harness pipeline to complete. They output JSON when --json flag is used. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Fixed 5 file(s) based on 9 unresolved review comments. Co-authored-by: CodeRabbit <noreply@coderabbit.ai>
- Fix parseAgentIntent to skip option values when finding first command - Fix resolveErrorContext to detect --json from raw argv (avoiding yargs defaults) - Improve agent mode processing to handle option values correctly - Always validate URL format in global check (catches invalid URLs in preview mode) Fixes test failures: - api-url validation now returns E_VALIDATION instead of E_POLICY - JSON output with -o flag now creates parent directories correctly - CLI args are properly preserved through intent parsing Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
P1: Relax SPARQL intent regex to allow --agent flag in argv P1: Replace CommonJS require with ESM imports in attestation handler P2: Add new harness commands to trailing-help allowlist P2: Gate intent preprocessing on enabled --agent mode only P2: Treat --agent=false as disabled in agent detection P2: Accept hyphenated queries in search intent shorthand Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Add --findings, --contract, and --mode options to remediate run command for Harness CI compatibility. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Add typecheck, lint, and check scripts as aliases to existing scripts. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Remove unused fixFlagOrder function (dead code) - Fix fail handler to include agent-formatted error in JSON output for consistency with emitUnhandledCliError Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Fix shell snippet in AGENTS.md (move comments before command) - Fix rate limiting example to include --user-agent - Remove exit code 4 from spec (not implemented) - Fix normalizeEntityId regex to match assertEntityId flexibility Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Why: generated prek hooks default to ~/.cache/prek, which can fail in sandboxed environments.\n\nWhat: patch installed prek shim scripts with a repo-local PREK_HOME export after prek install and route Makefile hooks through the setup script.\n\nImpact: git hook execution no longer depends on writable home-directory cache paths. Co-authored-by: Codex <noreply@openai.com>
Co-authored-by: Codex <noreply@openai.com>
Co-authored-by: Codex <noreply@openai.com>
Why: project-local governance defaults and environment/tooling checks needed to be executable inside this repo without relying on workspace-level scripts. What: add local hook-governance scripts with explicit required inputs, add verify-work wrapper with explicit workspace mode, add repo scope artifacts/docs, and wire minimal mise + check-environment canonical tooling generation. Impact/Risk: governance checks now default local and workspace checks are opt-in; low runtime risk, but docs and scripts changed across the repo. Co-authored-by: Codex <noreply@openai.com>
📝 WalkthroughWalkthroughThis PR establishes a comprehensive tooling and governance framework, including pinned runtime versions via Mise, automated environment validation, new hook-governance verification workflows, and a transition from npm-based git hooks to make-based hook implementations via prek. Changes
Sequence Diagram(s)sequenceDiagram
participant User as Developer
participant VerifyScript as scripts/verify-work.sh
participant RolloutCheck as rollout_check.py
participant DocstringRatchet as evaluate_docstring_ratchet.py
participant ManifestFile as repo-scope.manifest.json
User->>VerifyScript: npm run verify-work
VerifyScript->>VerifyScript: Parse --project-governance or --workspace-governance
alt Workspace Mode
VerifyScript->>ManifestFile: Load manifest.json
ManifestFile-->>VerifyScript: inventory, classification, metrics paths
VerifyScript->>RolloutCheck: Run with manifest paths
VerifyScript->>DocstringRatchet: Run with manifest paths
else Project-Local Mode (default)
VerifyScript->>VerifyScript: Create temp files for inventory/classification/metrics
VerifyScript->>RolloutCheck: Run with temp paths
VerifyScript->>DocstringRatchet: Run with temp paths
VerifyScript->>VerifyScript: Cleanup temp files on exit
end
RolloutCheck-->>VerifyScript: Report: stale repos, pass/fail
DocstringRatchet-->>VerifyScript: Report: coverage delta, pass/fail
VerifyScript-->>User: Success or failure message
sequenceDiagram
participant NPM as npm install/ci
participant CheckEnv as scripts/check-environment.sh
participant ToolValidation as Binary & Action Validators
participant RalphContract as ralph/ralph doctor
participant ToolingDoc as scripts/render-tooling-doc.py
NPM->>CheckEnv: Triggered by npm setup
CheckEnv->>CheckEnv: Load .agent/tooling.requirements.json and .mise.toml
CheckEnv->>ToolValidation: Validate required binaries (git, mise, node, python, etc.)
ToolValidation-->>CheckEnv: Pass or fail per binary
alt Binaries Present
CheckEnv->>CheckEnv: Activate mise tools
CheckEnv->>ToolingDoc: Render tooling inventory markdown
ToolingDoc-->>CheckEnv: Generated markdown
CheckEnv->>CheckEnv: Compare with docs/agents/tooling.md
alt Doc Mismatch
CheckEnv-->>NPM: Exit 1 (stale doc)
else Doc Match
CheckEnv->>RalphContract: Run ralph check-environment or ralph doctor
RalphContract-->>CheckEnv: Contract result
CheckEnv-->>NPM: Exit 0 (success)
end
else Binaries Missing
CheckEnv-->>NPM: Exit 1 (missing tools)
end
Estimated code review effort🎯 4 (Complex) | ⏱️ ~60 minutes Justification: Heterogeneous changes across tooling config, environment bootstrap automation, dual-scope governance workflows, and git hook migration. The changes involve: (1) new Python governance scripts with SLO/window logic requiring semantic validation; (2) bash environment validation with complex TOML/JSON parsing and fallback handling; (3) hook system refactoring from npm postinstall to make-based prek entries with patching logic updates; (4) scope policy enforcement (project-local vs. workspace) introducing new operational modes. Each major area (governance, hooks, validation, artifacts) demands separate reasoning. Moderate file spread with dense logic in bootstrap scripts and governance validators. Governance scope boundaries and temp artifact cleanup warrant particular scrutiny. 🚥 Pre-merge checks | ✅ 2 | ❌ 3❌ Failed checks (2 warnings, 1 inconclusive)
✅ Passed checks (2 passed)
✏️ Tip: You can configure your own custom pre-merge checks in the settings. ✨ Finishing Touches📝 Generate docstrings
🧪 Generate unit tests (beta)
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Actionable comments posted: 25
🤖 Prompt for all review comments with AI agents
Verify each finding against the current code and only fix it if needed.
Inline comments:
In @.agent/PLANS.md:
- Line 48: The external_dep entry currently uses a hardcoded absolute path (the
string
"/Users/jamiecraik/.codex/worktrees/484a/agent-skills/backend/cli-spec#cli-spec-stable")
which is non-portable; update the external_dep value to a relative repository
path or remove the entry if it's only documentation—e.g., replace the absolute
path with a relative path to the cli-spec worktree or a git URL/semver
reference, and ensure the external_dep key still points to
"cli-spec#cli-spec-stable" (or the appropriate repo/branch tag) so other
contributors and CI can resolve it.
In @.codex/environments/environment.toml:
- Around line 51-64: Duplicate shell helpers bootstrap_node_tools and
run_node_pm are emitted multiple times; remove repeated definitions and
centralize them by defining these functions once and sourcing them where needed
(or place them under a single [setup] section) so each action calls
bootstrap_node_tools and run_node_pm without redefining them; update generator
template to emit a single shared helper block (refer to bootstrap_node_tools and
run_node_pm) and change action snippets to call the helpers instead of
redefining them.
- Around line 13-15: The script currently conditionally activates mise with
"eval \"$(mise activate bash)\" >/dev/null 2>&1 || true" which silences failures
and never validates ralph; update the environment setup so that mise activation
fails loudly (remove the "|| true" suppression) and add an explicit presence
check for ralph (e.g., use command -v ralph and exit non‑zero with a clear error
via process/logger or shell exit if missing). Ensure the set of validated
binaries matches the canonical .agent/tooling.requirements.json required_bins
(verify tooling.requirements.json and enforce each declared required_bin) so the
environment.toml validation logic validates mise and ralph and no longer
validates tools not listed in required_bins.
In `@docs/AGENTS.md`:
- Around line 67-86: Update the fenced code block under the "### 3. Detailed
Error Messages" section so the error output uses a language identifier (e.g.,
change ``` to ```text or ```plaintext) for the block containing "Error: Network
access is disabled. Re-run with --network." to ensure it’s treated as plain text
in rendered docs; keep the rest of the block content unchanged.
In `@docs/agents/01-instruction-map.md`:
- Around line 30-31: Replace the hardcoded absolute links to
`/Users/jamiecraik/dev/wsearch/docs/agents/tooling.md` and
`/Users/jamiecraik/dev/wsearch/docs/agents/hook-governance-scope-defaults.md` in
01-instruction-map.md with relative paths (e.g., `./tooling.md` and
`./hook-governance-scope-defaults.md`) so they resolve for other devs/CI; if
those absolute paths are intentionally required for Codex agent configuration,
instead add a short note in the same file explaining they are machine-specific
and should not be used by others.
In `@prek.toml`:
- Around line 25-31: The commit-msg hook entry uses "bash -lc" which spawns a
login shell and can slow or break hooks; change the repos.hooks entry for
id/name "hooks-commit-msg" to invoke make directly or via a non-login shell
(e.g., use "bash -c 'make hooks-commit-msg HOOK_COMMIT_MSG_FILE=\"$1\"' --" or
simply "make hooks-commit-msg HOOK_COMMIT_MSG_FILE=\"$1\""), and if a login
shell is actually required (for asdf/mise shims), add a short comment explaining
that justification next to the entry; update the entry value referenced in the
diff accordingly.
In `@references/CLI_SPECIFICATION.md`:
- Around line 64-79: The fenced code block under the "JSON Envelope Schema"
section is missing a language identifier; update the opening fence from ``` to
```json so the block starting with the JSON object containing "schema", "meta",
"summary", "status", "data", and "errors" is explicitly marked as JSON (e.g.,
change the fence that precedes the object with "schema": "wiki.{command}.v1" to
```json).
In `@references/CODE_REVIEW.md`:
- Around line 286-304: Add a single trailing newline character to the end of the
references/CODE_REVIEW.md file so it ends with exactly one newline (per
markdownlint MD047); update the file by placing a newline after the final line
in the "Post-Review Actions Log" / "Final Status: ALL FINDINGS RESOLVED" section
ensuring no extra blank lines are appended.
In `@repo-scope.manifest.json`:
- Around line 5-6: The manifest currently writes governance reports to tracked
locations via the rollout_out and docstring_out keys pointing at
docs/hooks-governance/*; change these values to transient, project-local targets
(for example a .tmp/, build/, or tmp/ subfolder inside the repo) so verification
runs do not overwrite shared tracked reports—update the rollout_out and
docstring_out entries to point to those temporary paths.
In `@scripts/check-environment.sh`:
- Around line 160-162: The for-loop over REQUIRED_BINS calls check_bin_entry but
doesn't explicitly exit on failure; update the loop that iterates over
REQUIRED_BINS so that after calling check_bin_entry (the function named
check_bin_entry) it checks the return status and exits non-zero on failure
(e.g., use an explicit conditional or "|| exit 1") to ensure the script stops
when a required binary is missing rather than relying on implicit set -e
behavior.
- Around line 187-207: The temporary file generated_tooling_doc may not be
removed on early exits; before running python3 set a trap to remove that temp
file (e.g., trap 'rm -f "$generated_tooling_doc"' EXIT) so it always cleans up
on script exit, and ensure the trap is installed only after
generated_tooling_doc is created (or guard removal when variable is empty) so
functions/blocks that call mktemp then exit (the python3 call, the tooling-doc
mismatch branch, etc.) cannot leak the temp file; update the script around the
mktemp call and the branches that call exit to rely on that trap.
In `@scripts/hook-governance/evaluate_docstring_ratchet.py`:
- Around line 50-53: The comparison using delta >= 0 can fail near
floating-point boundaries; change the logic in the block that computes
baseline/current/delta/passing to use a small epsilon tolerance (e.g., eps =
1e-9 or a configurable constant) and set passing = delta >= -eps so tiny
negative noise is allowed; update the docstring for the
evaluate_docstring_ratchet logic (or nearby comment) to state the tolerance
choice, or explicitly document that exact comparison is required if you intend
no tolerance.
- Around line 47-48: Wrap the two calls to _read_json that populate
classification_doc and metrics_doc in try/except to catch FileNotFoundError and
json.JSONDecodeError (and a general Exception fallback); on error log a clear,
user-friendly message that includes the path and the original exception (or
print to stderr) and exit with a non-zero status or re-raise a custom error so
the script fails cleanly; update the code near the classification_doc and
metrics_doc assignments and reference the _read_json function names and the
classification_path/metrics_path variables when adding the error handling.
In `@scripts/hook-governance/rollout_check.py`:
- Around line 36-41: The --recovery-slo-hours argument added via
parser.add_argument is captured but never used; either implement SLO logic that
compares repo timestamps against the provided recovery_slo_hours (e.g., parse
args.recovery_slo_hours and use it in the stale-repo check routine to flag repos
older than now - recovery_slo_hours) or remove the parser.add_argument call; if
you intend to keep it for future work, add a clear TODO comment next to
parser.add_argument("--recovery-slo-hours", ...) referencing the planned
function (stale repo check / report generation) so it's not left unused.
- Around line 45-50: Wrap reading and parsing of the inventory file
(inventory_path.read_text and json.loads into inventory_doc) in a try/except
that handles FileNotFoundError, PermissionError and json.JSONDecodeError; if an
error occurs print a clear message to stderr (including the inventory_path and
the error message) and sys.exit(1) so CI sees a non-zero exit code. Also
validate inventory_path.exists() before reading and only call
_extract_repos/invoke _is_stale when parsing succeeds; keep references to
inventory_path, inventory_doc, _extract_repos, and _is_stale to locate the
affected code paths.
In `@scripts/render-tooling-doc.py`:
- Around line 12-18: read_json and read_toml currently let raw parser exceptions
bubble up for malformed content; wrap the parsing in try/except to catch
json.JSONDecodeError for read_json and tomllib.TOMLDecodeError (or a generic
Exception fallback) for read_toml, and raise a clearer ValueError (or re-raise
with from) that includes the file path (the Path argument) and the original
error message so callers (and check-environment.sh users) get a concise,
actionable error; reference the functions read_json and read_toml and ensure the
original exception is attached as the __cause__ when re-raising.
In `@scripts/setup-git-hooks.js`:
- Around line 104-120: The three legacy-cleanup branches that inspect
packageJson (checks against packageJson.devDependencies["simple-git-hooks"],
packageJson.scripts.postinstall.includes("simple-git-hooks"), and
packageJson["simple-git-hooks"]) should either be removed if you intend to drop
legacy support or be made explicit about no-op cases; update each branch that
currently only deletes and sets modified to also log a debug/info message when
the legacy key is not present so the behavior is visible, or consolidate the
three checks into a small helper (e.g., removeLegacyHookKey) that tries deletion
and sets modified and logs either "removed legacy X" or "no legacy X found" for
each of packageJson.devDependencies, packageJson.scripts.postinstall, and
packageJson["simple-git-hooks"] while preserving the existing modified flag
semantics.
- Around line 72-81: The hook patching is brittle and not using the safer write
helper: update the replacement logic in the block handling
hookContent/patched/PREK_HOOK_PATCH so it uses a robust regex (e.g., match any
final "exec \"$PREK\" hook-impl" line with optional whitespace/comments) instead
of the exact string 'fi\n\nexec "$PREK" hook-impl', and log a warning when no
match occurs so failures are visible (referencing patched, hookContent,
PREK_HOOK_PATCH). Also replace the plain writeFileSync(hookPath, patched) call
with the same atomic/safe helper used for package.json (writeFileNoFollow or
equivalent) to avoid TOCTOU issues and ensure hookPath is written securely;
increment patchedCount only after a successful safe write.
In `@scripts/verify-work.sh`:
- Around line 135-169: The script repeatedly spawns Python to parse the same
manifest (creating inventory, classification, metrics, rollout_out,
docstring_out), which is inefficient; replace the five separate python3
invocations with a single python3 invocation that loads the JSON once and prints
the five fields in order, then read those five values into the corresponding
shell variables (inventory, classification, metrics, rollout_out, docstring_out)
using a single read/command-substitution or here-doc pipeline so the manifest is
opened only once.
- Around line 79-127: The temp files tmp_inventory, tmp_classification,
tmp_metrics, tmp_rollout_out and tmp_docstring_out created when
SCOPE="project-local" can leak if the script exits early; add a trap right after
those files are created (before invoking python3) that removes those tmp_* files
on EXIT (and optionally on ERR/INT) to ensure cleanup even on failure, then
remove the explicit rm -f at the end; reference the tmp_* variable names and the
ROLLOUT_CHECK/DOCSTRING_CHECK invocation so the trap surrounds the python3
calls.
In `@src/agent.ts`:
- Around line 31-38: Add unit tests that assert FLAG_ALIASES normalization
inside parseAgentIntent: write tests that call parseAgentIntent (or the CLI
argument normalization helper it uses) with variants "-n", "--net", "--online"
and verify they all become "--network"; test "-ua" becomes "--user-agent";
ensure command and positional args are preserved after normalization and that
the normalized args are forwarded to whatever CLI validation function
parseAgentIntent invokes. Use the FLAG_ALIASES map and parseAgentIntent function
names to locate the logic and add assertions that normalizedArgs (or the parsed
output) match expected normalized flag names and original positional/command
tokens.
In `@src/cli.ts`:
- Around line 1706-1711: Replace the manual exists/read pattern that uses
fs.existsSync and fs.readFileSync for contractPath with the existing
readFileOrThrow helper: call readFileOrThrow(contractPath) to obtain the file
contents (remove the explicit exists check and the direct fs.readFileSync call),
then JSON.parse the returned string into contract; do the same substitution for
the other occurrence that uses fs.readFileSync (the similar command later in
this file) so all file reads use the readFile/readFileOrThrow utilities for
consistent error handling.
- Around line 1792-1798: The GitHub API fetch call is using a hardcoded
"User-Agent": "wsearch-cli/1.0" which bypasses the configured user-agent; update
the headers for the fetch to use the configured user-agent value (the same
source used for Wikidata calls, e.g. the CLI option or WIKI_USER_AGENT exposed
on globals) instead of the literal string — modify the fetch where prResponse is
created (apiUrl, globals.token) to read the user-agent from the existing
configuration (globals.userAgent or the variable that holds
WIKI_USER_AGENT/--user-agent) and pass that into the "User-Agent" header.
- Around line 1725-1737: The glob-to-regex conversion is unsafe: replace the
naive pattern.replace(/\*/g, ".*") with a safe escaping step before turning
wildcards into regex; add a helper (e.g., escapeRegex) and use it on each
pattern to escape regex metacharacters, then replace escaped "\*" (or original
'*' positions) with ".*" and construct the RegExp in a try/catch to handle
invalid patterns; update the loop where changedFiles, patterns, and new
RegExp(...) are used (the block that throws CliError with tierName) so patterns
are escaped, wildcard-translated, and invalid patterns are handled gracefully.
- Around line 2004-2008: The `.completion()` call is misindented relative to its
sibling `.strict()` in the yargs chain; open the yargs command chain around the
`outputResult(...)` call and adjust the indentation of the
`.completion("completion", "Generate shell completion script")` line to match
the `.strict()` line (use the same two-space indentation used for `.strict()`),
keeping the method call and arguments unchanged so only formatting is updated.
🪄 Autofix (Beta)
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ℹ️ Review info
⚙️ Run configuration
Configuration used: Organization UI
Review profile: ASSERTIVE
Plan: Pro
Run ID: e7a766b7-6566-4cf4-8135-979eb188e7e2
⛔ Files ignored due to path filters (1)
package-lock.jsonis excluded by!**/package-lock.json
📒 Files selected for processing (32)
.agent/PLANS.md.agent/tooling.requirements.json.codex/environments/environment.toml.gitignore.markdownlint-cli2.yaml.mise.tomlLICENSEMakefileREADME.mddocs/AGENTS.mddocs/agents/01-instruction-map.mddocs/agents/hook-governance-scope-defaults.mddocs/agents/tooling.mddocs/hooks-governance/docstring-ratchet-metrics.jsondocs/hooks-governance/public-api-classification.jsondocs/hooks-governance/repo-profile-matrix.jsonpackage.jsonprek.tomlreferences/CLI_SPECIFICATION.mdreferences/CLI_SPEC_REVIEW.mdreferences/CODE_REVIEW.mdrepo-scope.manifest.jsonscripts/check-environment.shscripts/hook-governance/evaluate_docstring_ratchet.pyscripts/hook-governance/rollout_check.pyscripts/render-tooling-doc.pyscripts/setup-git-hooks.jsscripts/verify-work.shsrc/agent.tssrc/cli-errors.tssrc/cli.tssrc/types.ts
📜 Review details
🧰 Additional context used
📓 Path-based instructions (8)
docs/agents/{**/*.md,docs/**/*.md,.github/**/*.md}
📄 CodeRabbit inference engine (docs/agents/06-contradictions-and-cleanup.md)
Organize documentation sections by single responsibility principle to keep instructions scannable, avoiding miscellaneous sections that mix multiple policy categories
Files:
docs/agents/01-instruction-map.mddocs/agents/tooling.mddocs/agents/hook-governance-scope-defaults.md
{.coderabbit.yaml,.github/**,harness.contract.json,.harness/ci-required-checks.json,src/lib/policy/required-checks.ts,src/commands/review-gate.ts,src/commands/branch-protect.ts,src/commands/ci-migrate.ts,docs/agents/**,.github/PULL_REQUEST_TEMPLATE.md,docs/agents/04-validation.md,docs/agents/07b-agent-governance.md,docs/agents/12-ai-review-governance.md,docs/agents/17-ci-required-checks.md}
📄 CodeRabbit inference engine (Custom checks)
Governance Parity: Apply this check only when the PR touches
.coderabbit.yaml,.github/**,harness.contract.json,.harness/ci-required-checks.json,src/lib/policy/required-checks.ts,src/commands/review-gate.ts,src/commands/branch-protect.ts,src/commands/ci-migrate.ts, ordocs/agents/**. Pass only when the changed policy surface is reflected in the matching governance docs and contract surfaces:.github/PULL_REQUEST_TEMPLATE.md,docs/agents/04-validation.md,docs/agents/07b-agent-governance.md,docs/agents/12-ai-review-governance.md, anddocs/agents/17-ci-required-checks.mdwhen applicable.
Files:
docs/agents/01-instruction-map.mddocs/agents/tooling.mddocs/agents/hook-governance-scope-defaults.md
**
⚙️ CodeRabbit configuration file
**: Use repo evidence first: prefer package scripts, tracked docs, harness contracts, and validation wrappers over assumptions.
Treat contradictions between code, docs, and workflow policy as review-worthy even when the code itself looks reasonable.
Focus on concrete behavioral risk, missing validation, and governance drift rather than style-only feedback.
Files:
docs/agents/01-instruction-map.mddocs/hooks-governance/docstring-ratchet-metrics.jsonsrc/types.tsdocs/hooks-governance/public-api-classification.jsondocs/hooks-governance/repo-profile-matrix.jsonLICENSErepo-scope.manifest.jsondocs/agents/tooling.mdreferences/CODE_REVIEW.mdsrc/cli-errors.tsprek.tomlpackage.jsonreferences/CLI_SPECIFICATION.mdscripts/verify-work.shscripts/setup-git-hooks.jsscripts/hook-governance/rollout_check.pyscripts/check-environment.shscripts/hook-governance/evaluate_docstring_ratchet.pyreferences/CLI_SPEC_REVIEW.mdMakefileREADME.mddocs/agents/hook-governance-scope-defaults.mdscripts/render-tooling-doc.pydocs/AGENTS.mdsrc/cli.tssrc/agent.ts
docs/**/*.md
⚙️ CodeRabbit configuration file
docs/**/*.md: This repo relies on docs as executable governance.
Check that commands, required checks, review-provider expectations, and validation steps are accurate for the current repository state.
Flag stale Greptile or CodeRabbit guidance, contradictions, or references to checks that no longer exist.
Files:
docs/agents/01-instruction-map.mddocs/agents/tooling.mddocs/agents/hook-governance-scope-defaults.mddocs/AGENTS.md
src/**
⚙️ CodeRabbit configuration file
src/**: This repository is a TypeScript control plane for coding-harness policy and review workflows.
Focus on behavioral regressions in CLI commands, policy derivation, generated contract boundaries, and required-check naming.
When command or policy behavior changes, expect matching tests or updated validation coverage.
Files:
src/types.tssrc/cli-errors.tssrc/cli.tssrc/agent.ts
.agent/PLANS.md
📄 CodeRabbit inference engine (AGENTS.md)
Maintain
.agent/PLANS.mdusingtasks / id / depends_oncontract
Files:
.agent/PLANS.md
.agent/*.md
📄 CodeRabbit inference engine (AGENTS.md)
Validate plan files with:
python3 /Users/jamiecraik/.codex/scripts/plan-graph-lint.py <plan-file>
Files:
.agent/PLANS.md
scripts/**
⚙️ CodeRabbit configuration file
scripts/**: Shell and bootstrap scripts are contract surfaces here.
Check bash vs zsh assumptions, path handling, repo-root detection, and failure modes carefully.
Flag changes that silently weaken required preflight or verification behavior.
Files:
scripts/verify-work.shscripts/setup-git-hooks.jsscripts/hook-governance/rollout_check.pyscripts/check-environment.shscripts/hook-governance/evaluate_docstring_ratchet.pyscripts/render-tooling-doc.py
🧠 Learnings (14)
📓 Common learnings
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: AGENTS.md:0-0
Timestamp: 2026-04-11T12:34:10.418Z
Learning: Participate in agent-first scaffold program with required global references to OpenAI agent workflow playbook, README checklist, validator contracts, strict toggle governance, and agent-first scaffold spec
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/AGENTS.md:0-0
Timestamp: 2026-04-11T12:34:26.671Z
Learning: Applies to docs/{**/*.{sh,bash},**/*.{yml,yaml},Dockerfile,docker-compose.yml,*.sh} : Enable agent mode with `--agent` flag when using wsearch from AI agents to get detailed error messages with context-aware examples and actionable fix hints
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/AGENTS.md:0-0
Timestamp: 2026-04-11T12:34:26.671Z
Learning: Applies to docs/{**/*.{sh,bash},**/*.{yml,yaml},Dockerfile,docker-compose.yml,*.sh} : Always include `--non-interactive` flag with wsearch to prevent prompts in automated/agent scenarios
Learnt from: CR
URL:
File: docs/AGENTS.md:undefined-undefined
Timestamp: 2026-04-11T21:03:16.743Z
Learning: wsearch agent mode provides detailed error messages with context-aware examples and actionable fix hints for every error type
Learnt from: CR
URL:
File: docs/AGENTS.md:undefined-undefined
Timestamp: 2026-04-11T21:03:16.743Z
Learning: wsearch in agent mode accepts flexible input parsing that normalizes common variations and provides guidance on correct format
Learnt from: CR
URL:
File: docs/AGENTS.md:undefined-undefined
Timestamp: 2026-04-11T21:03:16.743Z
Learning: wsearch provides automatic retries with backoff for rate limiting, eliminating the need for agents to implement their own retry logic
Learnt from: CR
URL:
File: docs/agents/01-instruction-map.md:undefined-undefined
Timestamp: 2026-04-11T21:03:22.570Z
Learning: Follow instruction priority order: 1) `/Users/jamiecraik/.codex/AGENTS.md`, 2) `/Users/jamiecraik/dev/wsearch/AGENTS.md`, 3) Files under `/Users/jamiecraik/dev/wsearch/docs/agents/`, 4) Task-specific user instructions in the active chat. If two instructions conflict at the same priority level, stop and ask the user which one wins.
Learnt from: CR
URL:
File: docs/agents/01-instruction-map.md:undefined-undefined
Timestamp: 2026-04-11T21:03:22.570Z
Learning: Runtime environment is Node.js 18+
Learnt from: CR
URL:
File: docs/agents/01-instruction-map.md:undefined-undefined
Timestamp: 2026-04-11T21:03:22.570Z
Learning: Use npm as the package manager
Learnt from: CR
URL:
File: docs/agents/01-instruction-map.md:undefined-undefined
Timestamp: 2026-04-11T21:03:22.570Z
Learning: Primary language is TypeScript
Learnt from: CR
URL:
File: docs/agents/hook-governance-scope-defaults.md:undefined-undefined
Timestamp: 2026-04-11T21:03:31.406Z
Learning: Apply code and config mutations in the target local project by default; workspace-level or cross-repo mutation must be explicitly requested via flags like `--workspace-governance`
Learnt from: CR
URL:
File: docs/agents/hook-governance-scope-defaults.md:undefined-undefined
Timestamp: 2026-04-11T21:03:31.406Z
Learning: When no target project path is clear, the agent must stop and ask for the exact local project root instead of mutating shared workspace artifacts
Learnt from: CR
URL:
File: docs/agents/hook-governance-scope-defaults.md:undefined-undefined
Timestamp: 2026-04-11T21:03:31.406Z
Learning: Generated governance outputs in project-local mode must be temporary or local to that project and must not overwrite shared tracked governance reports
Learnt from: CR
URL:
File: docs/agents/hook-governance-scope-defaults.md:undefined-undefined
Timestamp: 2026-04-11T21:03:31.406Z
Learning: Local developer workflows should default to project-local scope rather than workspace-level scope
Learnt from: CR
URL:
File: docs/agents/hook-governance-scope-defaults.md:undefined-undefined
Timestamp: 2026-04-11T21:03:31.406Z
Learning: Each repository should include a short scope-policy markdown document explaining the default project-local governance behavior
Learnt from: CR
URL:
File: docs/agents/tooling.md:undefined-undefined
Timestamp: 2026-04-11T21:03:37.439Z
Learning: Run `bash scripts/check-environment.sh --write-tooling-doc` to regenerate the tooling inventory documentation
📚 Learning: 2026-04-11T12:34:26.671Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/AGENTS.md:0-0
Timestamp: 2026-04-11T12:34:26.671Z
Learning: Applies to docs/{**/*.{sh,bash},**/*.{yml,yaml},Dockerfile,docker-compose.yml,*.sh} : Enable agent mode with `--agent` flag when using wsearch from AI agents to get detailed error messages with context-aware examples and actionable fix hints
Applied to files:
docs/agents/01-instruction-map.md.markdownlint-cli2.yamlreferences/CODE_REVIEW.mdreferences/CLI_SPECIFICATION.mdreferences/CLI_SPEC_REVIEW.mdREADME.mddocs/AGENTS.mdsrc/cli.tssrc/agent.ts
📚 Learning: 2026-04-11T12:34:26.671Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/AGENTS.md:0-0
Timestamp: 2026-04-11T12:34:26.671Z
Learning: Applies to docs/{**/*.{sh,bash},**/*.{yml,yaml},Dockerfile,docker-compose.yml,*.sh} : Always include `--non-interactive` flag with wsearch to prevent prompts in automated/agent scenarios
Applied to files:
docs/agents/01-instruction-map.mddocs/hooks-governance/public-api-classification.jsonreferences/CODE_REVIEW.mdreferences/CLI_SPECIFICATION.mdreferences/CLI_SPEC_REVIEW.mdREADME.md.codex/environments/environment.tomldocs/AGENTS.mdsrc/cli.ts
📚 Learning: 2026-04-11T12:34:26.671Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/AGENTS.md:0-0
Timestamp: 2026-04-11T12:34:26.671Z
Learning: Applies to docs/{**/*.{sh,bash},**/*.{yml,yaml},Dockerfile,docker-compose.yml,*.sh} : Set `--user-agent` flag with wsearch to identify your agent (e.g., `--user-agent "Agent/1.0"`) as it is required by Wikimedia APIs
Applied to files:
docs/agents/01-instruction-map.mdreferences/CLI_SPECIFICATION.mdreferences/CLI_SPEC_REVIEW.mdREADME.mddocs/AGENTS.md
📚 Learning: 2026-04-11T12:34:26.671Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/AGENTS.md:0-0
Timestamp: 2026-04-11T12:34:26.671Z
Learning: Applies to docs/{**/*.{sh,bash},**/*.{yml,yaml},Dockerfile,docker-compose.yml,*.sh} : Always include `--json` flag with wsearch for machine-readable output in agent/automated scenarios
Applied to files:
docs/agents/01-instruction-map.mddocs/hooks-governance/public-api-classification.jsonreferences/CODE_REVIEW.mdreferences/CLI_SPECIFICATION.mdreferences/CLI_SPEC_REVIEW.mdREADME.mddocs/AGENTS.md
📚 Learning: 2026-04-11T12:34:10.418Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: AGENTS.md:0-0
Timestamp: 2026-04-11T12:34:10.418Z
Learning: Participate in agent-first scaffold program with required global references to OpenAI agent workflow playbook, README checklist, validator contracts, strict toggle governance, and agent-first scaffold spec
Applied to files:
.agent/PLANS.mdREADME.mddocs/agents/hook-governance-scope-defaults.md
📚 Learning: 2026-04-11T12:34:33.105Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: coderabbit-custom-pre-merge-checks-unique-id-file-non-traceable-F7F2B60C-1728-4C9A-8889-4F2235E186CA.txt:0-0
Timestamp: 2026-04-11T12:34:33.105Z
Learning: Validation Evidence: PR description must include `## Testing` section with non-empty values for `verification_commands:`, `verification_outcomes:`, and `blocked_steps_reason:`. Each `Command:` line in `## Testing` must record an explicit result. `CodeRabbit:` and `Codex:` under `## Review artifacts` must have non-placeholder values.
Applied to files:
references/CODE_REVIEW.md
📚 Learning: 2026-04-11T12:33:36.350Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/agents/03-validation.md:0-0
Timestamp: 2026-04-11T12:33:36.350Z
Learning: Run typecheck using `npm run lint:types` for TypeScript validation
Applied to files:
package.json
📚 Learning: 2026-04-11T12:33:36.350Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/agents/03-validation.md:0-0
Timestamp: 2026-04-11T12:33:36.350Z
Learning: Run tests using `npm test` as part of validation for changes
Applied to files:
package.jsonMakefile
📚 Learning: 2026-04-11T12:33:44.147Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/agents/04-security-and-governance.md:0-0
Timestamp: 2026-04-11T12:33:44.147Z
Learning: Run Gitleaks security checks using `npm run gitleaks`
Applied to files:
package.json
📚 Learning: 2026-04-11T12:33:36.350Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/agents/03-validation.md:0-0
Timestamp: 2026-04-11T12:33:36.350Z
Learning: Run Markdown lint using `npm run lint:docs` for documentation files
Applied to files:
package.json
📚 Learning: 2026-04-11T12:33:36.350Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/agents/03-validation.md:0-0
Timestamp: 2026-04-11T12:33:36.350Z
Learning: Run Vale style lint using `npm run lint:docs:vale` for documentation files
Applied to files:
package.json
📚 Learning: 2026-04-11T12:33:56.828Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/agents/06-contradictions-and-cleanup.md:0-0
Timestamp: 2026-04-11T12:33:56.828Z
Learning: Applies to docs/agents/{package.json,package-lock.json,npm-shrinkwrap.json,docs/**/*.md,README.md} : Maintain npm as the package manager for this repository (brainwav/wsearch-cli), not alternative package managers
Applied to files:
package.json
📚 Learning: 2026-04-11T12:34:26.671Z
Learnt from: CR
Repo: jscraik/wSearch PR: 0
File: docs/AGENTS.md:0-0
Timestamp: 2026-04-11T12:34:26.671Z
Learning: Applies to docs/{**/*.{sh,bash},**/*.{yml,yaml},Dockerfile,docker-compose.yml,*.sh} : Always include `--network` flag for all wsearch API calls as network access is opt-in for safety
Applied to files:
references/CLI_SPECIFICATION.mddocs/AGENTS.md
🪛 checkmake (0.2.2)
Makefile
[warning] 4-4: Missing required phony target "all"
(minphony)
🪛 LanguageTool
references/CODE_REVIEW.md
[uncategorized] ~34-~34: Possible missing preposition found.
Context: ...ree diagram showing full hierarchy - All 11 commands documented with subcommands...
(AI_HYDRA_LEO_MISSING_OF)
[uncategorized] ~40-~40: Did you mean the formatting language “Markdown” (= proper noun)?
Context: ...istent column formatting - No broken markdown table syntax 4. **JSON Schema Examples...
(MARKDOWN_NNP)
[uncategorized] ~212-~212: Use a comma before ‘but’ if it connects two independent clauses (unless they are closely connected and short).
Context: ...ing (POSIX)** - Exit code 130 defined but no explicit handler documented - **R...
(COMMA_COMPOUND_SENTENCE_2)
[uncategorized] ~282-~282: Possible missing comma found.
Context: ...tion Minor formatting fixes recommended but not blocking. --- *Review completed b...
(AI_HYDRA_LEO_MISSING_COMMA)
references/CLI_SPECIFICATION.md
[misspelling] ~322-~322: This word is normally spelled as one.
Context: .... 2. --profile for multi-environment configs 3.
(EN_COMPOUNDS_MULTI_ENVIRONMENT)
references/CLI_SPEC_REVIEW.md
[misspelling] ~316-~316: This word is normally spelled as one.
Context: ...) 2. --profile for multi-environment configs 3.
(EN_COMPOUNDS_MULTI_ENVIRONMENT)
README.md
[typographical] ~116-~116: Two consecutive dots
Context: ...evention** | Raw requests validated; no .. or encoded separators allowed | | **Tok...
(DOUBLE_PUNCTUATION)
[locale-violation] ~209-~209: License must be spelled with a “c” when used as a noun in British English. Use “licence”.
Context: ....md) — Using wsearch from AI agents ## License Apache 2.0 — See LICENSE -...
(LICENCE_LICENSE_NOUN_SINGULAR)
[locale-violation] ~211-~211: LICENSE must be spelled with a “c” when used as a noun in British English. Use “licence”.
Context: ...I agents ## License Apache 2.0 — See LICENSE --- brAInwav — _from de...
(LICENCE_LICENSE_NOUN_SINGULAR)
docs/agents/hook-governance-scope-defaults.md
[grammar] ~60-~60: The verb ‘recommended’ is used with the gerund form.
Context: ...inventory) 1. Scope-inherited scripts (recommended to stay input-driven): - `validate_gate_registr...
(ADMIT_ENJOY_VB)
[uncategorized] ~107-~107: Use a comma before ‘so’ if it connects two independent clauses (unless they are closely connected and short).
Context: ...short scope-policy markdown in each repo so the default is discoverable. 1. Validat...
(COMMA_COMPOUND_SENTENCE_2)
docs/AGENTS.md
[uncategorized] ~342-~342: Possible missing comma found.
Context: ...[] } ``` Error responses have the same structure with status: "error" and populated `e...
(AI_HYDRA_LEO_MISSING_COMMA)
🪛 markdownlint-cli2 (0.22.0)
references/CODE_REVIEW.md
[warning] 71-71: Fenced code blocks should have a language specified
(MD040, fenced-code-language)
[warning] 215-215: Files should end with a single newline character
(MD047, single-trailing-newline)
references/CLI_SPECIFICATION.md
[warning] 71-71: Fenced code blocks should have a language specified
(MD040, fenced-code-language)
[warning] 215-215: Files should end with a single newline character
(MD047, single-trailing-newline)
references/CLI_SPEC_REVIEW.md
[warning] 71-71: Fenced code blocks should have a language specified
(MD040, fenced-code-language)
[warning] 215-215: Files should end with a single newline character
(MD047, single-trailing-newline)
README.md
[warning] 71-71: Fenced code blocks should have a language specified
(MD040, fenced-code-language)
[warning] 215-215: Files should end with a single newline character
(MD047, single-trailing-newline)
docs/agents/hook-governance-scope-defaults.md
[warning] 71-71: Fenced code blocks should have a language specified
(MD040, fenced-code-language)
docs/AGENTS.md
[warning] 71-71: Fenced code blocks should have a language specified
(MD040, fenced-code-language)
[warning] 392-392: Files should end with a single newline character
(MD047, single-trailing-newline)
[warning] 215-215: Files should end with a single newline character
(MD047, single-trailing-newline)
🪛 Ruff (0.15.9)
scripts/hook-governance/rollout_check.py
[warning] 16-16: Dynamically typed expressions (typing.Any) are disallowed in doc
(ANN401)
scripts/hook-governance/evaluate_docstring_ratchet.py
[warning] 13-13: Dynamically typed expressions (typing.Any) are disallowed in _read_json
(ANN401)
[warning] 17-17: Dynamically typed expressions (typing.Any) are disallowed in value
(ANN401)
[warning] 24-24: Dynamically typed expressions (typing.Any) are disallowed in doc
(ANN401)
scripts/render-tooling-doc.py
[warning] 62-62: Use list.extend to create a transformed list
(PERF401)
🔇 Additional comments (38)
scripts/hook-governance/rollout_check.py (1)
16-23: Static analysis hint (ANN401) is a false positive here.Using
Anyfor JSON document parsing is appropriate given the schema flexibility required. No action needed..gitignore (1)
15-15: LGTM!Ignoring
.codex/hook-conformance.jsonaligns with the learning that generated governance outputs in project-local mode should remain temporary and untracked..markdownlint-cli2.yaml (1)
8-16: LGTM!Exclusions for transient directories (
_temp,ai,.greptile) and reference material are appropriate. The.github/**exclusion is broad but acceptable if workflow markdown files are linted separately or intentionally exempt.references/CLI_SPEC_REVIEW.md (1)
1-329: CLI specification review is comprehensive and aligns with implementation.Cross-referencing with the provided code snippets:
src/config.tsconfirms atomic writes with0o600permissions and ownership validationsrc/crypto.tsconfirms scrypt + AES-256-GCM encryptionsrc/cli.tsconfirms path traversal prevention viaassertApiRelativePathThe documentation accurately reflects the current implementation. Static analysis hints (MD040, MD047) are likely false positives given this file is excluded via
references/**in.markdownlint-cli2.yaml.docs/hooks-governance/docstring-ratchet-metrics.json (1)
1-4: LGTM!Coverage metrics file is well-structured. Current coverage (0.92) exceeds baseline (0.90), so the ratchet check will pass with a positive delta.
LICENSE (1)
1-190: Apache 2.0 licence text is standard and package.json declaration is consistent.No NOTICE file currently exists in the repository. Under Apache 2.0 Section 4(d), a NOTICE file is required only if the project distributes third-party works with their own attribution notices. The presence of
yargsand other runtime dependencies may trigger this requirement—confirm with each dependency's licence whether attribution is needed before distribution.src/types.ts (1)
41-41: Looks good: optionalagentflag is backward-compatible.This is a safe additive change to
CliGlobalsand does not break existing call sites.docs/hooks-governance/public-api-classification.json (1)
1-8: Classification payload is coherent with the governance flow.The shape is clear and matches the documented local-governance inputs.
docs/hooks-governance/repo-profile-matrix.json (1)
1-10: Inventory baseline is well-formed for rollout checks.This segment provides the expected repo metadata in a consumable format.
.agent/tooling.requirements.json (1)
1-21: Tooling requirements schema and values line up with the checker logic.Good use of canonical inputs;
python3|pythonis supported by the existing bin-resolution flow..mise.toml (1)
1-4: Pinned Mise tool definitions look correct for the intended workflow.This is a clean canonical source for environment verification.
docs/agents/tooling.md (1)
1-40: Documentation structure and commands are clear and consistent.The sections are scannable and the regeneration step matches the documented tooling workflow.
src/cli-errors.ts (1)
5-18: Shared CLI error abstraction is solid and pragmatic.
CliError+isCliErrorprovides a clear typed boundary for downstream error handling.scripts/verify-work.sh (2)
186-187: Script exits without newline may cause display issues.The final
echooutputs successfully but the script doesn't have a final newline after line 187. This is fine for execution but may affect display in some terminals.
1-12: LGTM on script initialisation and defaults.Good use of
set -euo pipefailfor strict error handling. The REPO_ROOT detection viadirnameis robust, and defaulting toproject-localscope aligns with the governance learnings.prek.toml (1)
1-15: LGTM on overall hook wiring.The hook configuration correctly declares all three hook types and wires them to the corresponding Makefile targets. The
pass_filenamessettings are appropriate:falsefor pre-commit/pre-push (staged files not needed) andtruefor commit-msg (file path required).package.json (3)
35-40: LGTM on script consolidation.The new
typecheck,lint,check, anddocs:lintscripts provide clear entry points aligned with the repository's validation workflow. Thecheckscript correctly combines type checking and tests as per validation learnings.
52-53: LGTM on verify-work script wiring.The
verify-workandverify-work:workspacescripts correctly delegate to the shell script with appropriate flags. This aligns with the learnings that local developer workflows should default to project-local scope.
70-70: Ensure licence change is intentional and documented.The licence has changed from MIT to Apache-2.0. This is a significant change that may affect downstream consumers. Verify this is intentional and consider noting it in release notes or CHANGELOG.
.agent/PLANS.md (1)
5-46: LGTM on task graph structure.The YAML task graph correctly follows the
tasks / id / depends_oncontract. Dependencies form a valid DAG with appropriate parallel work (T3, T4, T5 depending on T2) and join points (T7 on T4+T5, T8 on T6+T7).references/CODE_REVIEW.md (2)
1-88: LGTM on review documentation structure.The simulated multi-perspective review methodology is well-documented and provides useful reference material. The findings are appropriately categorised and actionable.
55-66:⚠️ Potential issue | 🟡 MinorAdd language specifier to fenced code block.
The code block on line 56-58 (metadata example) is missing a language specifier. This triggers markdownlint MD040.
📝 Proposed fix
- ```markdown + ```markdown **Version: 1.0.0Actually the issue is on line 71 per static analysis. Looking at lines 55-66, I see the code block starting at line 55 has
markdownspecified. Let me check line 71.The markdownlint warning on line 71 indicates a fenced code block without language specifier. Add an appropriate language identifier (e.g.,
markdownoryaml).> Likely an incorrect or invalid review comment.scripts/setup-git-hooks.js (2)
36-47: LGTM on TOCTOU-safe write helper.The
writeFileNoFollowfunction correctly usesO_NOFOLLOWto prevent symlink-based filesystem race conditions when writing to package.json. Good defensive coding.
148-151: Error handling on prek failure is appropriate.Setting
process.exitCode = 1(non-throwing) allows the script to complete gracefully while signalling failure. The error message provides actionable guidance.Makefile (2)
29-42: LGTM on commit-msg hook implementation.The
hooks-commit-msgtarget correctly:
- Supports three input methods (inline, file path via two env vars) for flexibility.
- Uses
trapfor temp file cleanup ensuring no leaked files.- Exits with code 2 for usage errors (distinct from validation failures).
- Properly quotes variables to handle paths with spaces.
20-27: LGTM on hook wiring migration.The
hookstarget correctly delegates to the new prek-based setup script, andhooks-pre-commit/hooks-pre-pushtargets align with the repository's npm script conventions.scripts/hook-governance/evaluate_docstring_ratchet.py (1)
35-69: LGTM on main implementation.The script correctly:
- Requires explicit input paths (no workspace-level defaults).
- Computes coverage delta and outputs a structured report.
- Uses exit code 0/1 for CI integration.
- Creates parent directories for output path.
This aligns with the governance scope defaults documented in
docs/agents/hook-governance-scope-defaults.md.references/CLI_SPECIFICATION.md (1)
1-331: Comprehensive CLI specification.The documentation accurately reflects the implemented CLI behaviour in
src/cli.ts, including the--networkopt-in requirement,--agentmode features, exit code semantics, and security controls. The versioned JSON envelope schema and config precedence rules align with the implementation.scripts/render-tooling-doc.py (1)
80-108: LGTM on script entry point and argument handling.Arguments are properly resolved to absolute paths, and the
print(..., end="")correctly produces output without trailing newline for consistentcmpbehaviour in the calling shell script.scripts/check-environment.sh (1)
209-231: Good fallback logic for legacy ralph support.The fallback from
ralph check-environmenttoralph doctorplus explicit Node version and package manager checks provides graceful degradation whilst maintaining contract verification.README.md (1)
1-215: README accurately reflects CLI implementation.The documented flags (
--network,--user-agent,--agent,--json,--print-request), exit codes, and security features align with the implementation insrc/cli.ts. The license badge correctly reflects Apache 2.0.docs/AGENTS.md (1)
89-105: Good alignment with learnings on required agent flags.The recommended pattern correctly includes all required flags (
--agent,--network,--non-interactive,--json,--user-agent) as documented in the retrieved learnings for agent/automated scenarios.docs/agents/hook-governance-scope-defaults.md (2)
36-52: Documentation accurately reflects script implementations.The claims about required arguments are verified against the code snippets:
rollout_check.pyhas--inventoryasrequired=True(Context snippet 2)evaluate_docstring_ratchet.pyhas--classificationand--metricsasrequired=True(Context snippet 3)verify-work.shdefaults toproject-localand creates temp files (Context snippet 1)
21-35: Clear agent mutation policy.The mandatory defaults (project-local by default, workspace opt-in, stop-and-ask on unclear scope) align with the retrieved learnings and provide actionable governance for agent implementations.
src/cli.ts (1)
433-447: Good agent-mode entity ID normalisation.The
assertEntityIdfunction correctly supports flexible formats (q42,q-42,q_42) in agent mode whilst maintaining strict validation in normal mode. This aligns with the documented behaviour indocs/AGENTS.md.src/agent.ts (3)
82-137: Intent patterns are well-designed with clear boundary matching.The regex patterns use
\bfor word boundaries and handle flexible entity ID formats consistently withnormalizeEntityId. The search pattern correctly stops at flags (--) to avoid swallowing options.
517-545: Levenshtein implementation is correct.The dynamic programming approach is standard and handles edge cases properly. The fallback
?? 0on line 544 is defensive but the logic ensuresmatrix[b.length]?.[a.length]is always defined.
235-452: Comprehensive error help mappings.The
getErrorHelpfunction provides contextual, actionable guidance for common error scenarios. The check for User-Agent errors before genericE_POLICY(line 288) correctly prioritises specific over general help.
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Note Autofix is a beta feature. Expect some limitations and changes as we gather feedback and continue to improve it. Fixes Applied SuccessfullyFixed 15 file(s) based on 23 unresolved review comments. Files modified:
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Fixed 15 file(s) based on 23 unresolved review comments. Co-authored-by: CodeRabbit <noreply@coderabbit.ai>
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Actionable comments posted: 4
♻️ Duplicate comments (1)
scripts/verify-work.sh (1)
143-150:⚠️ Potential issue | 🟠 MajorDo not fall back to tracked docs outputs in workspace mode.
If a stale or custom manifest omits
rollout_outordocstring_out, this wrapper silently reverts todocs/hooks-governance/*. That reintroduces tracked-report churn even though the checked-in manifest has already moved those outputs under.tmp/.Minimal fix
- doc.get("rollout_out", "docs/hooks-governance/rollout-check-report.json"), - doc.get("docstring_out", "docs/hooks-governance/docstring-ratchet-report.json"), + doc.get("rollout_out", ""), + doc.get("docstring_out", ""), @@ -if [ -z "$inventory" ] || [ -z "$classification" ] || [ -z "$metrics" ]; then - echo "Manifest must include inventory, classification, and metrics paths." +if [ -z "$inventory" ] || [ -z "$classification" ] || [ -z "$metrics" ] || [ -z "$rollout_out" ] || [ -z "$docstring_out" ]; then + echo "Manifest must include inventory, classification, metrics, rollout_out, and docstring_out paths." exit 1 fiBased on learnings: "Standalone hook-governance scripts should be input-driven and remain scope-inherited rather than having implicit workspace defaults."
🤖 Prompt for AI Agents
Verify each finding against the current code and only fix it if needed. In `@scripts/verify-work.sh` around lines 143 - 150, The wrapper currently falls back to tracked docs paths via doc.get("rollout_out", "docs/hooks-governance/rollout-check-report.json") and doc.get("docstring_out", "docs/hooks-governance/docstring-ratchet-report.json"); remove those default values so doc.get only reads the manifest keys (i.e., call doc.get("rollout_out") and doc.get("docstring_out")), and extend the manifest validation (the existing inventory/classification/metrics check) to also require rollout_out and docstring_out so the script errors out if the manifest omits them instead of silently reverting to docs/hooks-governance/*.
🤖 Prompt for all review comments with AI agents
Verify each finding against the current code and only fix it if needed.
Inline comments:
In @.codex/environments/environment.toml:
- Around line 28-37: The environment contract is missing make, causing CI/local
git hooks (invoked via prek.toml's "make hooks-pre-commit", "make
hooks-pre-push", "make hooks-commit-msg") to fail; add a require_tool entry for
make (e.g., require_tool make "install GNU Make and ensure it is on PATH")
alongside the existing require_tool lines in
.codex/environments/environment.toml so the environment validation fails fast if
make is absent.
In `@scripts/hook-governance/evaluate_docstring_ratchet.py`:
- Around line 63-79: The code assumes metrics_doc is a dict when calling
metrics_doc.get(...) after _read_json(metrics_path); add a shape validation
immediately after reading (e.g., check isinstance(metrics_doc, dict)) and treat
non-dict results (list, scalar, None) as a metrics parsing error: print a clear
stderr message referencing metrics_path and the unexpected type, then return 1
before calling _to_float; keep using _to_float for keys "baseline_coverage" and
"current_coverage" only after the dict-check so the functions _read_json,
_to_float and the metrics_doc variable are correctly protected from
AttributeError.
In `@scripts/hook-governance/rollout_check.py`:
- Around line 47-82: The code currently only checks inventory_path.exists() and
may allow directories (causing IsADirectoryError) and similar issues for
out_path; update the validation and error handling so inventory_path.is_file()
is required before calling inventory_path.read_text(), catching
IsADirectoryError, PermissionError, and FileNotFoundError around the read (and
reporting the original exception via stderr and sys.exit), and ensure out_path
is not a directory and its parent is writable before calling
out_path.write_text()—validate with out_path.exists() and out_path.is_dir(),
try/except write errors (IsADirectoryError, PermissionError, OSError) and create
parent dirs only if safe; reference inventory_path, out_path, read_text,
write_text, _extract_repos, and _is_stale when locating where to add these
checks and handlers.
In `@scripts/verify-work.sh`:
- Around line 135-150: The read into variables (read -r inventory classification
metrics rollout_out docstring_out) splits on whitespace so empty fields or paths
with spaces misalign values; change the subprocess output to emit one value per
line (inventory, classification, metrics, rollout_out defaulting to
docs/hooks-governance/rollout-check-report.json, docstring_out defaulting to
docs/hooks-governance/docstring-ratchet-report.json) and replace the shell read
with mapfile -t to populate the array, then assign array indices to
inventory/classification/metrics/rollout_out/docstring_out so each field is
preserved even if empty or contains spaces; update any downstream references to
use those variables.
---
Duplicate comments:
In `@scripts/verify-work.sh`:
- Around line 143-150: The wrapper currently falls back to tracked docs paths
via doc.get("rollout_out", "docs/hooks-governance/rollout-check-report.json")
and doc.get("docstring_out",
"docs/hooks-governance/docstring-ratchet-report.json"); remove those default
values so doc.get only reads the manifest keys (i.e., call
doc.get("rollout_out") and doc.get("docstring_out")), and extend the manifest
validation (the existing inventory/classification/metrics check) to also require
rollout_out and docstring_out so the script errors out if the manifest omits
them instead of silently reverting to docs/hooks-governance/*.
🪄 Autofix (Beta)
Fix all unresolved CodeRabbit comments on this PR:
- Push a commit to this branch (recommended)
- Create a new PR with the fixes
ℹ️ Review info
⚙️ Run configuration
Configuration used: Organization UI
Review profile: ASSERTIVE
Plan: Pro
Run ID: cdbb70a0-9256-4382-a34f-5337a931644e
⛔ Files ignored due to path filters (1)
package-lock.jsonis excluded by!**/package-lock.json
📒 Files selected for processing (14)
.agent/PLANS.md.codex/environments/environment.tomldocs/agents/01-instruction-map.mdpackage.jsonprek.tomlrepo-scope.manifest.jsonscripts/check-environment.shscripts/hook-governance/evaluate_docstring_ratchet.pyscripts/hook-governance/rollout_check.pyscripts/render-tooling-doc.pyscripts/setup-git-hooks.jsscripts/verify-work.shsrc/agent.tssrc/cli.ts
📜 Review details
🧰 Additional context used
📓 Path-based instructions (8)
.agent/PLANS.md
📄 CodeRabbit inference engine (AGENTS.md)
Maintain
.agent/PLANS.mdusingtasks / id / depends_oncontract
Files:
.agent/PLANS.md
.agent/*.md
📄 CodeRabbit inference engine (AGENTS.md)
Validate plan files with:
python3 /Users/jamiecraik/.codex/scripts/plan-graph-lint.py <plan-file>
Files:
.agent/PLANS.md
docs/agents/{**/*.md,docs/**/*.md,.github/**/*.md}
📄 CodeRabbit inference engine (docs/agents/06-contradictions-and-cleanup.md)
Organize documentation sections by single responsibility principle to keep instructions scannable, avoiding miscellaneous sections that mix multiple policy categories
Files:
docs/agents/01-instruction-map.md
{.coderabbit.yaml,.github/**,harness.contract.json,.harness/ci-required-checks.json,src/lib/policy/required-checks.ts,src/commands/review-gate.ts,src/commands/branch-protect.ts,src/commands/ci-migrate.ts,docs/agents/**,.github/PULL_REQUEST_TEMPLATE.md,docs/agents/04-validation.md,docs/agents/07b-agent-governance.md,docs/agents/12-ai-review-governance.md,docs/agents/17-ci-required-checks.md}
📄 CodeRabbit inference engine (Custom checks)
Governance Parity: Apply this check only when the PR touches
.coderabbit.yaml,.github/**,harness.contract.json,.harness/ci-required-checks.json,src/lib/policy/required-checks.ts,src/commands/review-gate.ts,src/commands/branch-protect.ts,src/commands/ci-migrate.ts, ordocs/agents/**. Pass only when the changed policy surface is reflected in the matching governance docs and contract surfaces:.github/PULL_REQUEST_TEMPLATE.md,docs/agents/04-validation.md,docs/agents/07b-agent-governance.md,docs/agents/12-ai-review-governance.md, anddocs/agents/17-ci-required-checks.mdwhen applicable.
Files:
docs/agents/01-instruction-map.md
**
⚙️ CodeRabbit configuration file
**: Use repo evidence first: prefer package scripts, tracked docs, harness contracts, and validation wrappers over assumptions.
Treat contradictions between code, docs, and workflow policy as review-worthy even when the code itself looks reasonable.
Focus on concrete behavioral risk, missing validation, and governance drift rather than style-only feedback.
Files:
docs/agents/01-instruction-map.mdrepo-scope.manifest.jsonsrc/cli.tssrc/agent.tsprek.tomlscripts/setup-git-hooks.jsscripts/hook-governance/rollout_check.pyscripts/render-tooling-doc.pyscripts/check-environment.shscripts/hook-governance/evaluate_docstring_ratchet.pyscripts/verify-work.shpackage.json
docs/**/*.md
⚙️ CodeRabbit configuration file
docs/**/*.md: This repo relies on docs as executable governance.
Check that commands, required checks, review-provider expectations, and validation steps are accurate for the current repository state.
Flag stale Greptile or CodeRabbit guidance, contradictions, or references to checks that no longer exist.
Files:
docs/agents/01-instruction-map.md
src/**
⚙️ CodeRabbit configuration file
src/**: This repository is a TypeScript control plane for coding-harness policy and review workflows.
Focus on behavioral regressions in CLI commands, policy derivation, generated contract boundaries, and required-check naming.
When command or policy behavior changes, expect matching tests or updated validation coverage.
Files:
src/cli.tssrc/agent.ts
scripts/**
⚙️ CodeRabbit configuration file
scripts/**: Shell and bootstrap scripts are contract surfaces here.
Check bash vs zsh assumptions, path handling, repo-root detection, and failure modes carefully.
Flag changes that silently weaken required preflight or verification behavior.
Files:
scripts/setup-git-hooks.jsscripts/hook-governance/rollout_check.pyscripts/render-tooling-doc.pyscripts/check-environment.shscripts/hook-governance/evaluate_docstring_ratchet.pyscripts/verify-work.sh
🧠 Learnings (1)
📓 Common learnings
Learnt from: CR
URL:
File: docs/agents/01-instruction-map.md:undefined-undefined
Timestamp: 2026-04-11T22:26:53.223Z
Learning: Refer to `/Users/jamiecraik/.codex/AGENTS.md` as the first priority instruction source
Learnt from: CR
URL:
File: docs/agents/01-instruction-map.md:undefined-undefined
Timestamp: 2026-04-11T22:26:53.223Z
Learning: Refer to `/Users/jamiecraik/dev/wsearch/AGENTS.md` as the second priority instruction source
Learnt from: CR
URL:
File: docs/agents/01-instruction-map.md:undefined-undefined
Timestamp: 2026-04-11T22:26:53.223Z
Learning: Refer to files under `/Users/jamiecraik/dev/wsearch/docs/agents/` as the third priority instruction source
Learnt from: CR
URL:
File: docs/agents/hook-governance-scope-defaults.md:undefined-undefined
Timestamp: 2026-04-11T22:26:59.768Z
Learning: Agent implementations must apply code and config mutations to the target local project by default, with workspace-level or cross-repo mutations available only via explicit opt-in flags like `--workspace-governance`
Learnt from: CR
URL:
File: docs/agents/hook-governance-scope-defaults.md:undefined-undefined
Timestamp: 2026-04-11T22:26:59.768Z
Learning: When target project path is unclear, agents must stop and request explicit local project root instead of mutating shared workspace artifacts
Learnt from: CR
URL:
File: docs/agents/hook-governance-scope-defaults.md:undefined-undefined
Timestamp: 2026-04-11T22:26:59.768Z
Learning: When documentation and execution scope diverge, the executable project-local contract (verify-work wrapper plus explicit script inputs) takes precedence over inferred workspace defaults
Learnt from: CR
URL:
File: docs/agents/hook-governance-scope-defaults.md:undefined-undefined
Timestamp: 2026-04-11T22:26:59.768Z
Learning: Standalone hook-governance scripts should be input-driven and remain scope-inherited rather than having implicit workspace defaults
Learnt from: CR
URL:
File: docs/agents/tooling.md:undefined-undefined
Timestamp: 2026-04-11T22:27:04.543Z
Learning: Run `bash scripts/check-environment.sh --write-tooling-doc` to regenerate the tooling documentation
🪛 Ruff (0.15.9)
scripts/hook-governance/rollout_check.py
[warning] 17-17: Dynamically typed expressions (typing.Any) are disallowed in doc
(ANN401)
scripts/render-tooling-doc.py
[warning] 16-16: Avoid specifying long messages outside the exception class
(TRY003)
[warning] 24-24: Avoid specifying long messages outside the exception class
(TRY003)
[warning] 68-68: Use list.extend to create a transformed list
(PERF401)
scripts/hook-governance/evaluate_docstring_ratchet.py
[warning] 14-14: Dynamically typed expressions (typing.Any) are disallowed in _read_json
(ANN401)
[warning] 18-18: Dynamically typed expressions (typing.Any) are disallowed in value
(ANN401)
[warning] 25-25: Dynamically typed expressions (typing.Any) are disallowed in doc
(ANN401)
[warning] 36-36: Too many return statements (7 > 6)
(PLR0911)
[warning] 58-58: Do not catch blind exception: Exception
(BLE001)
[warning] 73-73: Do not catch blind exception: Exception
(BLE001)
🔇 Additional comments (4)
docs/agents/01-instruction-map.md (1)
30-31: Good fix: linked docs are now portable and repo-local.Line 30 and Line 31 correctly switch to relative paths, which removes machine-specific coupling and keeps instruction-map links usable in CI and by other contributors.
src/cli.ts (2)
1735-1737: Yargs chaining looks correct after the move.
.completion(...)is now aligned with.strict()on the root chain, and command registration behaviour remains intact.
1781-1787: CLI bootstrap/error path remains consistent.The async entrypoint still routes parse failures through
emitUnhandledCliError, so startup failure handling is preserved.repo-scope.manifest.json (1)
5-6: Transient output defaults look right.Keeping workspace reports under
.tmp/avoids mutating tracked governance artefacts during routine verification runs.Based on learnings: "Agent implementations must apply code and config mutations to the target local project by default, with workspace-level or cross-repo mutations available only via explicit opt-in flags like
--workspace-governance."
Co-authored-by: Codex <noreply@openai.com>
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