v0.10.1

[rafalkowalewski1]

Localize

• Fixed Gauss-fitting error when spot's sum is zero (zero division error)

Render

• Faster rendering through improvements for all blur methods and multi-level spatial indexing for quick zoomed-in rendering
• Multichannel rendering supports colormaps, not only a single RGB color
• Anisotripic DBSCAN (with faster implementation) DOI: 10.1021/acs.jpcb.4c02030
• Faster cluster centers calculation for SMLM clusterer, DBSCAN and HDBSCAN + lpz is saved if applicable
• Load FOV keeps the aspect ratio of the input .txt file
• Files dialog resizing fixed
• Show 3D clustering widgets only when 3D data is loaded
• Fixed linking saving lpz
• Fixed high-resolution display of mask in Render (masking in render does not display all details #666)
• Removed render property cache since it did not provide any significant speed improvement

SPINNA

• Comparing models uses fitting modes (Bayesian, etc) and has a cleaner progress dialog
• Convenient fitting of LE
• Area/volume button removed (deduced automatically from densities and number of molecules in the exp. data)
• Show 3D masking widgets only if 3D mask is selected
• Batch analysis for LE fitting
• Batch analysis does not require area input (if found in metadata)
• Batch analysis has clear instructions on what columns are required via CLI and the docs update
• Fixed NND plot reindexing after fitting (SPINNA occasionally throws an error #665)

Filter

• Efficient Filter: much lower RAM usage + faster filtering by histogram selection (1D/2D), especially for very large datasets

Others

• Expanded the scope of the sample notebooks
• Improved docstrings for 3D SMLM clusterer
• Flake8 clean-up
• Installers are distributed with readme.txt files (previously .rst)
• Minor changes to documentation
• Fixed subcluster check plot when one of the two populations is empty (Subcluster plot throws an error when one population is empty #667)
• Fixed 2D fitting with console printout and no multiprocessing