Bio LLM Agent: RNA-seq → Clinical Report (M4 Mac Mini)

Zero-cost, local LLM pipeline for automated clinical interpretation of RNA-seq data using BioGPT + LangChain on Apple Silicon M4.

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Features

• Input: rna_seq_results.csv (DESeq2 output)
• Output: Clinical-grade gene function reports in <1 second
• Model: microsoft/biogpt (PubMed-trained)
• Hardware: M4 Mac Mini (MPS GPU acceleration)
• Cost: $0 (no cloud, no API)

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How to Run

pip install langchain langchain-huggingface transformers pandas sacremoses
python bio_report_generator.py