Clear out Logseq lineage, re-license to Apache-2.0 (redo of #10 on top of BizerBrain rename)#13
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Same shape as the previously-open PR #10 (closed in favor of doing this on top of the BizerBrain rename). Removes ~427k lines of upstream Logseq code that the current build doesn't consume, and replaces the inherited AGPL-3.0 LICENSE.md with Apache-2.0 LICENSE. Removed (~1,768 files): - src/, deps/, public/, resources/, scripts/, externs/, externs.js, libs/, prompts/, bin/, icons/, assets/, dist/ - android/, ios/, fastlane/, capacitor.config.ts - clj-e2e/, cli-e2e/ - bb.edn, deps.edn, shadow-cljs.edn - gulpfile.js, postcss.config.js, tailwind.*, webpack.config.js - Root Logseq workspace: package.json, pnpm-lock.yaml - ssl/, docs/, typos.toml, rebase.md - Logseq dotfiles: .carve/, .clj-kondo/, .lsp/, .cljfmt.edn, .i18n-lint.toml, .projectile, .stylelintrc.json, .prettierrc.js, .npmrc - packages/ui/ (unused by notes-app and file-api) - Upstream agent skills (.agents/skills/logseq-*, esm-cjs-risk-scan) - Upstream workflows: build.yml, build-android, build-desktop-release, build-ios-release, build-plugin-docs, clj-e2e, clj-rtc-e2e, deploy-*, deps-*, update-i18n-lint, pr-labeler, stale-issues - Upstream .github configs: FUNDING.yml, ISSUE_TEMPLATE/, PULL_REQUEST_TEMPLATE/, pr-labeler.yml, stale-issues.yml - Upstream docs: AGENTS.md, CODEBASE_OVERVIEW.md, CODE_OF_CONDUCT.md, CONTRIBUTING.md - LICENSE.md (AGPL-3.0) Added/rewritten with BizerBrain branding: - LICENSE (Apache-2.0) - README.md (brief description, docker quickstart, agent-skill install) - Dockerfile header comment Tightened: - .gitignore: dropped Clojure-specific entries; scoped to Node + editor noise - .dockerignore: scoped to actual build inputs Result: 49 tracked files. Build-Docker inputs (Dockerfile, .dockerignore, docker/, packages/notes-app, packages/file-api) untouched; image build remains green.
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May 11, 2026
The README was written in PR #13 (cleanup), before PR #14 added packages/mcp-server. As a result, the MCP integration path was invisible to anyone landing on the repo, even though the server ships in the container build context. Changes: - Add packages/mcp-server to the Components list. - Rewrite the Agent integration section to cover both paths: - Option A: MCP server (Claude Code, Cursor, MCP-Inspector, any MCP-capable client). Single mcpServers JSON entry. - Option B: agentskills.io skill (Hermes, OpenClaw, Claude Code). Symlink the skill into the agent's skill directory. Both target the same BRAIN_DIR and expose the same four tools. Co-authored-by: Claude <noreply@anthropic.com>
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Summary
Same scope as the previously-open PR #10 (closed in favor of doing this on top of the BizerBrain rename). Clears all upstream Logseq code from the repo and switches the license from AGPL-3.0 to Apache-2.0.
1,817 files changed: 276 insertions, 426,989 deletions. Final repo: 49 tracked files. Everything that ships in the image is preserved; everything that was inherited from Logseq and unused by the current build is removed.
What's removed (~1,768 files)
src/,deps/,public/,resources/,static/outputs,scripts/,externs/,externs.js,libs/,prompts/,bin/,icons/,assets/,dist/android/,ios/,fastlane/,capacitor.config.tsclj-e2e/,cli-e2e/bb.edn,deps.edn,shadow-cljs.edn,gulpfile.js,postcss.config.js,tailwind.*,webpack.config.jspackage.json,pnpm-lock.yaml.carve/,.clj-kondo/,.lsp/,.cljfmt.edn,.i18n-lint.toml,.projectile,.stylelintrc.json,.prettierrc.js,.npmrc.agents/skills/logseq-*(7 skills),.agents/skills/esm-cjs-risk-scanpackages/uinotes-appandfile-apibuild.yml,build-android,build-desktop-release,build-ios-release,build-plugin-docs,clj-e2e,clj-rtc-e2e,deploy-*,deps-*,update-i18n-lint,pr-labeler,stale-issues.github/configsFUNDING.yml,ISSUE_TEMPLATE/,PULL_REQUEST_TEMPLATE/,pr-labeler.yml,stale-issues.ymlAGENTS.md,CODEBASE_OVERVIEW.md,CODE_OF_CONDUCT.md,CONTRIBUTING.md,docs/,rebase.md,typos.tomlLICENSE.mdWhat's added or rewritten (with BizerBrain branding)
LICENSE— Apache-2.0,Copyright 2026 BizerBrain contributorsREADME.md— replaced with a brief BizerBrain-branded description, architecture diagram, Docker quickstart, agent-skill install steps, and license noteDockerfile— first-line comment updated from "BizerOS Knowledge" to "BizerBrain" (caught and fixed during this PR; not in the rename PR Rename product to BizerBrain #12).gitignore— dropped Clojure/Logseq-specific entries; now scoped to Node + editor/OS noise.dockerignore— tightened to match the actual build inputsWhat remains
Why it's safe
Build-Dockerconsumes onlyDockerfile,.dockerignore,docker/,packages/notes-app/, andpackages/file-api/. None of those are touched by this cleanup. The image build will remain green and will publish toghcr.io/kelsi-bizer/bizerbrain:latest(renamed in #12).The other workflows being deleted are the ones that have been flaking on every recent PR — they were running upstream Logseq's Clojure tests against deleted upstream Logseq code. Removing them is correct.
Verified
grep "BizerOS\|@bizeros/\|bizeros-knowledge\|/srv/bizeros"in our owned files returns zero hitsTest plan
Build-Dockerworkflow on master completes greendocker pull ghcr.io/kelsi-bizer/bizerbrain:latestpulls successfullyLICENSEfile shows as Apache-2.0 in GitHub's UINext
After this merges, the second redo PR (sources/wiki split + truth-timeline + MCP server, was #11) goes up as a fresh branch with BizerBrain naming throughout.
Generated by Claude Code