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Getting started

What's new

• v1.8.0: csubst analyze --output_stat can now limit reported/computed combinatorial statistics (default: any2any,any2dif,any2spe).

Installation and test run

Dependency

Preparing CSUBST inputs

Interpreting output files of csubst analyze

Interpreting output files of csubst site

Parallel processing and performance tuning

Advanced analysis

Foreground specification

Analysis of higher order convergence

Mapping convergent substitutions on protein structures

Inspecting spurious convergence using csubst site

Simulating molecular convergence

Misc

How ω and ω_C are different

FAQ