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Merged
kgklein merged 1 commit into from
Sep 17, 2025
Merged

Updated heating output to differentiate between n=1 and n=-1, rather … #37

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8 changes: 4 additions & 4 deletions data/PLUME-Output-Table-2.svg
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8 changes: 4 additions & 4 deletions data/PLUME-Output-Table.svg
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5 changes: 4 additions & 1 deletion output.md
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Original file line number Diff line number Diff line change
Expand Up @@ -120,7 +120,8 @@ If `low_n` is true, we have
- 18+(11-6{!eigen})`nspec`+j. $P_j^{zy}$ (Landau Damping term 1).
- 18+(12-6{!eigen})`nspec`+j. $P_j^{zz}$ (Landau Damping term 2).
- 18+(13-6{!eigen})`nspec`+j. $P_j^{n=0}$ (sum of Landau and Transit Time Damping).
- 18+(14-6{!eigen})`nspec`+j. $P_j^{n=\pm 1}$ ($n=\pm 1$ Cyclotron Damping).
- 18+(14-6{!eigen})`nspec`+j. $P_j^{n=+1}$ ($n=+ 1$ Cyclotron Damping).
- 18+(15-6{!eigen})`nspec`+j. $P_j^{n=-1}$ ($n=- 1$ Cyclotron Damping).
Here, {!eigen} (negation of eigen boolean) is equal to 1 if eigen is false and 0 if eigen is true.

This will be followed by 6`nspec` columns containing the parameter lists $\mathcal{P}_j$ for each species or component.
Expand All @@ -132,6 +133,8 @@ This will be followed by 6`nspec` columns containing the parameter lists $\mathc
- 24+`noutperspec` `nspec`+6(j-1)-12({!eigen}). $v_{j,drift}/v_{A,ref}$.
Here, noutperspec = 0 is the number of additional outputs created by setting heating or eigen to true. If eigen and heating are false, then noutperspec = 7, if eigen is false and heating is true, then noutperspec = 8, and if eigen is true and if eigen and heating are true, then noutperspec=15. Note that {!eigen} (negation of eigen boolean) is equal to 1 if eigen is false and 0 if eigen is true.

For ease of reference, consider the below tables for column numbers for two and three component calculations.

![Table for output column numbering for a two-component plasma.](./data/PLUME-Output-Table.svg)

![Table for output column numbering for a three-component plasma.](./data/PLUME-Output-Table-2.svg)
Expand Down
61 changes: 40 additions & 21 deletions plotter/example/example_kpar.plt
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Original file line number Diff line number Diff line change
Expand Up @@ -43,6 +43,7 @@ dy=0.225
base_color='#000000'
n0_color='#009e73'
n1_color='#e68f00'
nm1_color='#00f86e'

set log x
set xrange [k_min:k_max]
Expand Down Expand Up @@ -135,7 +136,9 @@ file_in(mm) u 2:($35/sgn($5)) w l lc rgb base_color dt 2 title '$\gamma_p<0$' ,\
file_in(mm) u 2:(-$41/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 2:($41/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 2:(-$42/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 2:($42/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 2:($42/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 2:(-$43/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 2:($43/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Electron Damping Rates
unset label
Expand All @@ -151,10 +154,12 @@ set label '$|\gamma_e|/|\omega_{\textrm{r}}|$' at graph -0.3,0.15 rotate by 90
plot \
file_in(mm) u 2:(-$36/sgn($5)) w l lc rgb base_color dt 1 title '$\gamma_e>0$' ,\
file_in(mm) u 2:($36/sgn($5)) w l lc rgb base_color dt 2 title '$\gamma_e<0$' ,\
file_in(mm) u 2:(-$47/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 2:($47/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 2:(-$48/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 2:($48/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 2:(-$48/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 2:($48/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 2:(-$49/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 2:($49/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 2:(-$50/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 2:($50/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Polarization
unset label
Expand Down Expand Up @@ -224,7 +229,9 @@ file_in(mm) u 2:($35/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 2:(-$41/sgn($5)) w l lc rgb n0_color dt 1 title '$\gamma_p^{n=0}>0$' ,\
file_in(mm) u 2:($41/sgn($5)) w l lc rgb n0_color dt 2 title '$\gamma_p^{n=0}<0$' ,\
file_in(mm) u 2:(-$42/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 2:($42/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 2:($42/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 2:(-$43/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 2:($43/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Electron Damping Rates
unset label
Expand All @@ -239,10 +246,12 @@ set yrange [gam_min:gam_max]
plot \
file_in(mm) u 2:(-$36/sgn($5)) w l lc rgb base_color dt 1 title '' ,\
file_in(mm) u 2:($36/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 2:(-$47/sgn($5)) w l lc rgb n0_color dt 1 title '$\gamma_e^{n=0}>0$' ,\
file_in(mm) u 2:($47/sgn($5)) w l lc rgb n0_color dt 2 title '$\gamma_e^{n=0}<0$' ,\
file_in(mm) u 2:(-$48/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 2:($48/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 2:(-$48/sgn($5)) w l lc rgb n0_color dt 1 title '$\gamma_e^{n=0}>0$' ,\
file_in(mm) u 2:($48/sgn($5)) w l lc rgb n0_color dt 2 title '$\gamma_e^{n=0}<0$' ,\
file_in(mm) u 2:(-$49/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 2:($49/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 2:(-$50/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 2:($50/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Polarization
unset label
Expand Down Expand Up @@ -310,8 +319,10 @@ file_in(mm) u 2:(-$35/sgn($5)) w l lc rgb base_color dt 1 title '' ,\
file_in(mm) u 2:($35/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 2:(-$41/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 2:($41/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 2:(-$42/sgn($5)) w l lc rgb n1_color dt 1 title '$\gamma_p^{n=\pm 1}>0$' ,\
file_in(mm) u 2:($42/sgn($5)) w l lc rgb n1_color dt 2 title '$\gamma_p^{n=\pm 1}<0$'
file_in(mm) u 2:(-$42/sgn($5)) w l lc rgb n1_color dt 1 title '$\gamma_p^{n=+ 1}>0$' ,\
file_in(mm) u 2:($42/sgn($5)) w l lc rgb n1_color dt 2 title '$\gamma_p^{n=+ 1}<0$' ,\
file_in(mm) u 2:(-$43/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 2:($43/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Electron Damping Rates
unset label
Expand All @@ -326,10 +337,12 @@ set yrange [gam_min:gam_max]
plot \
file_in(mm) u 2:(-$36/sgn($5)) w l lc rgb base_color dt 1 title '' ,\
file_in(mm) u 2:($36/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 2:(-$47/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 2:($47/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 2:(-$48/sgn($5)) w l lc rgb n1_color dt 1 title '$\gamma_e^{n=\pm 1}>0$' ,\
file_in(mm) u 2:($48/sgn($5)) w l lc rgb n1_color dt 2 title '$\gamma_e^{n=\pm 1}<0$'
file_in(mm) u 2:(-$48/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 2:($48/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 2:(-$49/sgn($5)) w l lc rgb n1_color dt 1 title '$\gamma_e^{n=+ 1}>0$' ,\
file_in(mm) u 2:($49/sgn($5)) w l lc rgb n1_color dt 2 title '$\gamma_e^{n=+ 1}<0$' ,\
file_in(mm) u 2:(-$50/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 2:($50/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Polarization
unset label
Expand Down Expand Up @@ -398,7 +411,11 @@ file_in(mm) u 2:($35/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 2:(-$41/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 2:($41/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 2:(-$42/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 2:($42/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 2:($42/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 2:(-$43/sgn($5)) w l lc rgb nm1_color dt 1 title '$\gamma_p^{n=- 1}>0$' ,\
file_in(mm) u 2:($43/sgn($5)) w l lc rgb nm1_color dt 2 title '$\gamma_p^{n=- 1}<0$'



#Electron Damping Rates
unset label
Expand All @@ -413,10 +430,12 @@ set yrange [gam_min:gam_max]
plot \
file_in(mm) u 2:(-$36/sgn($5)) w l lc rgb base_color dt 1 title '' ,\
file_in(mm) u 2:($36/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 2:(-$47/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 2:($47/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 2:(-$48/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 2:($48/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 2:(-$48/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 2:($48/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 2:(-$49/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 2:($49/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 2:(-$50/sgn($5)) w l lc rgb nm1_color dt 1 title '$\gamma_e^{n=- 1}>0$' ,\
file_in(mm) u 2:($50/sgn($5)) w l lc rgb nm1_color dt 2 title '$\gamma_e^{n=- 1}>0$'

#Polarization
unset label
Expand Down
59 changes: 38 additions & 21 deletions plotter/example/example_kperp.plt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -43,6 +43,7 @@ dy=0.225
base_color='#000000'
n0_color='#009e73'
n1_color='#e68f00'
nm1_color='#00f86e'

set log x
set xrange [k_min:k_max]
Expand Down Expand Up @@ -135,7 +136,9 @@ file_in(mm) u 1:($35/sgn($5)) w l lc rgb base_color dt 2 title '$\gamma_p<0$' ,\
file_in(mm) u 1:(-$41/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 1:($41/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 1:(-$42/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 1:($42/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 1:($42/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 1:(-$43/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 1:($43/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Electron Damping Rates
unset label
Expand All @@ -151,10 +154,12 @@ set label '$|\gamma_e|/|\omega_{\textrm{r}}|$' at graph -0.3,0.15 rotate by 90
plot \
file_in(mm) u 1:(-$36/sgn($5)) w l lc rgb base_color dt 1 title '$\gamma_e>0$' ,\
file_in(mm) u 1:($36/sgn($5)) w l lc rgb base_color dt 2 title '$\gamma_e<0$' ,\
file_in(mm) u 1:(-$47/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 1:($47/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 1:(-$48/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 1:($48/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 1:(-$48/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 1:($48/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 1:(-$49/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 1:($49/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 1:(-$50/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 1:($50/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Polarization
unset label
Expand Down Expand Up @@ -224,7 +229,9 @@ file_in(mm) u 1:($35/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 1:(-$41/sgn($5)) w l lc rgb n0_color dt 1 title '$\gamma_p^{n=0}>0$' ,\
file_in(mm) u 1:($41/sgn($5)) w l lc rgb n0_color dt 2 title '$\gamma_p^{n=0}<0$' ,\
file_in(mm) u 1:(-$42/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 1:($42/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 1:($42/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 1:(-$43/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 1:($43/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Electron Damping Rates
unset label
Expand All @@ -239,10 +246,12 @@ set yrange [gam_min:gam_max]
plot \
file_in(mm) u 1:(-$36/sgn($5)) w l lc rgb base_color dt 1 title '' ,\
file_in(mm) u 1:($36/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 1:(-$47/sgn($5)) w l lc rgb n0_color dt 1 title '$\gamma_e^{n=0}>0$' ,\
file_in(mm) u 1:($47/sgn($5)) w l lc rgb n0_color dt 2 title '$\gamma_e^{n=0}<0$' ,\
file_in(mm) u 1:(-$48/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 1:($48/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 1:(-$48/sgn($5)) w l lc rgb n0_color dt 1 title '$\gamma_e^{n=0}>0$' ,\
file_in(mm) u 1:($48/sgn($5)) w l lc rgb n0_color dt 2 title '$\gamma_e^{n=0}<0$' ,\
file_in(mm) u 1:(-$49/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 1:($49/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 1:(-$50/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 1:($50/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Polarization
unset label
Expand Down Expand Up @@ -310,8 +319,10 @@ file_in(mm) u 1:(-$35/sgn($5)) w l lc rgb base_color dt 1 title '' ,\
file_in(mm) u 1:($35/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 1:(-$41/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 1:($41/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 1:(-$42/sgn($5)) w l lc rgb n1_color dt 1 title '$\gamma_p^{n=\pm 1}>0$' ,\
file_in(mm) u 1:($42/sgn($5)) w l lc rgb n1_color dt 2 title '$\gamma_p^{n=\pm 1}<0$'
file_in(mm) u 1:(-$42/sgn($5)) w l lc rgb n1_color dt 1 title '$\gamma_p^{n=+ 1}>0$' ,\
file_in(mm) u 1:($42/sgn($5)) w l lc rgb n1_color dt 2 title '$\gamma_p^{n=+ 1}<0$' ,\
file_in(mm) u 1:(-$43/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 1:($43/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Electron Damping Rates
unset label
Expand All @@ -326,10 +337,12 @@ set yrange [gam_min:gam_max]
plot \
file_in(mm) u 1:(-$36/sgn($5)) w l lc rgb base_color dt 1 title '' ,\
file_in(mm) u 1:($36/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 1:(-$47/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 1:($47/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 1:(-$48/sgn($5)) w l lc rgb n1_color dt 1 title '$\gamma_e^{n=\pm 1}>0$' ,\
file_in(mm) u 1:($48/sgn($5)) w l lc rgb n1_color dt 2 title '$\gamma_e^{n=\pm 1}<0$'
file_in(mm) u 1:(-$48/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 1:($48/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 1:(-$49/sgn($5)) w l lc rgb n1_color dt 1 title '$\gamma_e^{n=+ 1}>0$' ,\
file_in(mm) u 1:($49/sgn($5)) w l lc rgb n1_color dt 2 title '$\gamma_e^{n=+ 1}<0$' ,\
file_in(mm) u 1:(-$50/sgn($5)) w l lc rgb nm1_color dt 1 title '' ,\
file_in(mm) u 1:($50/sgn($5)) w l lc rgb nm1_color dt 2 title ''

#Polarization
unset label
Expand Down Expand Up @@ -398,7 +411,9 @@ file_in(mm) u 1:($35/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 1:(-$41/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 1:($41/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 1:(-$42/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 1:($42/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 1:($42/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 2:(-$43/sgn($5)) w l lc rgb nm1_color dt 1 title '$\gamma_p^{n=- 1}>0$' ,\
file_in(mm) u 2:($43/sgn($5)) w l lc rgb nm1_color dt 2 title '$\gamma_p^{n=- 1}>0$'

#Electron Damping Rates
unset label
Expand All @@ -413,10 +428,12 @@ set yrange [gam_min:gam_max]
plot \
file_in(mm) u 1:(-$36/sgn($5)) w l lc rgb base_color dt 1 title '' ,\
file_in(mm) u 1:($36/sgn($5)) w l lc rgb base_color dt 2 title '' ,\
file_in(mm) u 1:(-$47/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 1:($47/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 1:(-$48/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 1:($48/sgn($5)) w l lc rgb n1_color dt 2 title ''
file_in(mm) u 1:(-$4/sgn($5)) w l lc rgb n0_color dt 1 title '' ,\
file_in(mm) u 1:($48/sgn($5)) w l lc rgb n0_color dt 2 title '' ,\
file_in(mm) u 1:(-$49/sgn($5)) w l lc rgb n1_color dt 1 title '' ,\
file_in(mm) u 1:($49/sgn($5)) w l lc rgb n1_color dt 2 title '' ,\
file_in(mm) u 1:(-$50/sgn($5)) w l lc rgb nm1_color dt 1 title '$\gamma_e^{n=- 1}>0$' ,\
file_in(mm) u 1:($50/sgn($5)) w l lc rgb nm1_color dt 2 title '$\gamma_e^{n=- 1}>0$'

#Polarization
unset label
Expand Down
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