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kircherlab

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  1. MPRAsnakeflow MPRAsnakeflow Public

    With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IGVF consortium and a further development of MPRAflow.

    Python 15 9

Repositories

Showing 10 of 31 repositories
  • CMPRA_figures Public

    Notebooks containing figures for the CMPRA project

    kircherlab/CMPRA_figures’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 22, 2026
  • CADD_threshold_analysis Public
    kircherlab/CADD_threshold_analysis’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 22, 2026
  • MPRAsnakeflow Public

    With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IGVF consortium and a further development of MPRAflow.

    kircherlab/MPRAsnakeflow’s past year of commit activity
    Python 15 MIT 9 14 2 Updated Apr 22, 2026
  • Model-MPRA-Benchmark-Project Public

    Benchmarking DNA sequence models against multiple MPRA datasets with standardized pipelines

    kircherlab/Model-MPRA-Benchmark-Project’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 16, 2026
  • MPRA_SaturationMutagenesis Public

    R Shiny website of the Saturation Mutagenesis manuscript

    kircherlab/MPRA_SaturationMutagenesis’s past year of commit activity
    R 4 GPL-3.0 2 1 1 Updated Apr 14, 2026
  • CADD_threshold_app Public
    kircherlab/CADD_threshold_app’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 14, 2026
  • kircherlab.github.io Public

    Kircher Lab website

    kircherlab/kircherlab.github.io’s past year of commit activity
    HTML 1 0 0 0 Updated Apr 10, 2026
  • MPRAlib Public

    Library to analyse, filter and plot MPRA count data.

    kircherlab/MPRAlib’s past year of commit activity
    Python 2 MIT 1 2 0 Updated Apr 7, 2026
  • IGVF_MPRA_quantification Public

    With this workflow you can use the output of MPRAsnakeflow (reporter experiment barcode file) together with the MPRA library sequence design file to quantify the MPRA reporter expression. It can quantify variants as well as elements. using BCalm.

    kircherlab/IGVF_MPRA_quantification’s past year of commit activity
    R 0 MIT 0 1 1 Updated Mar 5, 2026
  • combined-kernel-gkmsvm Public
    kircherlab/combined-kernel-gkmsvm’s past year of commit activity
    C 0 0 0 0 Updated Mar 2, 2026
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