Add pipeline scripts, fix requirements, and update docs#15
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Mar 3, 2026
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- Add grace_pipeline.py: standalone train + optional test-set inference (RUN_TEST flag), auto-generates dataset.json if missing from nnU-Net sub-directories
- Add smoke_test.py: self-contained environment verification, no real data needed- Fix requirements.txt: add missing matplotlib, SimpleITK, Pillow, scipy; add torch installation note matching Docker base image (2.4.0-cuda12.1)
- Update README: conda/venv setup instructions, document new scripts
- Add grace_pipeline.py: standalone train + optional test-set inference (RUN_TEST flag),
auto-generates dataset.json if missing from nnU-Net sub-directories
- Add smoke_test.py: self-contained environment verification, no real data needed- Fix requirements.txt: add missing matplotlib, SimpleITK, Pillow, scipy;
add torch installation note matching Docker base image (2.4.0-cuda12.1)
- Update README: conda/venv setup instructions, document new scripts
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