CS124_Genotype_Phasing

clarks.py: Python script for phasing Usage: python3 clarks.py [genotype_data_file]

Input: If no genotype_data_file provided, defaults to "test_data_masked.txt" genotype_data_file expected to be in same folder

Output: Outputs to text file in same folder, named "test_data_sol.txt"

Name		Name	Last commit message	Last commit date
CS124ClassProjectMarch2020.pdf		CS124ClassProjectMarch2020.pdf
README.md		README.md
calculate_switch_accuracy.R		calculate_switch_accuracy.R
clarks.py		clarks.py
example_data_1.txt		example_data_1.txt
example_data_1_geno_positions.txt		example_data_1_geno_positions.txt
example_data_1_masked.txt		example_data_1_masked.txt
example_data_1_sol.txt		example_data_1_sol.txt
example_data_2.txt		example_data_2.txt
example_data_2_geno_positions.txt		example_data_2_geno_positions.txt
example_data_2_masked.txt		example_data_2_masked.txt
example_data_2_sol.txt		example_data_2_sol.txt
test_data_geno_positions.txt		test_data_geno_positions.txt
test_data_masked.txt		test_data_masked.txt
test_data_sol.txt		test_data_sol.txt

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