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Bug Report: Incorrect Precursor Selection in mzML Parser

Status: Open.

#210 In lazear/sage;

· jltovar opened on Jan 31, 2026

Sage stack overflows

Status: Open.

#207 In lazear/sage;

· keesh0 opened on Jan 13, 2026

missed_cleavages > 2 causes excessive memory usage on Linux Red Hat8

Status: Open.

#206 In lazear/sage;

· keesh0 opened on Jan 9, 2026

Unspecific digests and class I immunopeptidomics

Status: Open.

#199 In lazear/sage;

· candidaorelmex opened on Dec 3, 2025

JSON schema for config.json file as schema file

Status: Open.

#193 In lazear/sage;

· fabianegli opened on Sep 30, 2025

Sage fails silently if the protein database does not contain decoys in combination with <code>"generate_decoys": false</code>

Status: Open.

#192 In lazear/sage;

· fabianegli opened on Sep 22, 2025

Publish crates to crates.io

Status: Open.

#191 In lazear/sage;

· TheLostLambda opened on Aug 26, 2025

Large peptide ID number differences between v14.6 and v15.1

Status: Open.

#183 In lazear/sage;

· zix-xiao opened on May 12, 2025

Input handling guardrails and glob expansion

Status: Open.

#133 In lazear/sage;

· acesnik opened on Apr 30, 2024

Search using parquet files

Status: Open.

#125 In lazear/sage;

· prvst opened on Mar 18, 2024

diaPASEF first tests

Status: Open.

#123 In lazear/sage;

· KlemensFroehlich opened on Feb 25, 2024

Feature request: peptide position information in results

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#110 In lazear/sage;

· kabalak opened on Jan 3, 2024