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leila-alieh/README.md

Leila Alieh

Bioinformatician & Neurobiologist

NGS | Mass Spectrometry | Spatial and multi-omics | Biomarker discovery | Alternative Splicing

👋 About me

Scientist passionate about leveraging data analysis to advance basic research, precision medicine, and global health, with expertise in transcriptomics, mass spectrometry, and reproducible bioinformatics workflows.

🔬 Current focus

  • 🔭 Currently working on improving biomarker discovery approaches from liquid biopsies
  • 🌱 Currently learning scikit-learn, machine learning, and human learning for large human dataset analysis
  • 👯 Open to collaborations on biomarker discovery and precision medicine projects

🔗 Contact

📧 Email | 💼 LinkedIn | 🎓 SemanticScholar

Popular repositories Loading

  1. Alternative_Splicing_BiolOpen_2024 Alternative_Splicing_BiolOpen_2024 Public

    Code for the analysis of alternative splicing in the developing mammalian brain (Open Biology, 2024), integrating short- and long-read RNA-seq to detect and quantify cell-type–specific splicing eve…

    Shell

  2. leila-alieh leila-alieh Public

  3. Lipidomics_3D_Zebrafish_Atlas_Nat.Methods_2025 Lipidomics_3D_Zebrafish_Atlas_Nat.Methods_2025 Public

    Code for 3D reconstruction and anatomical annotation of lipid mass spectrometry imaging (MSI) data from zebrafish embryos (Nature Methods, 2025).

    Jupyter Notebook

  4. GATK4_Variant_Annotation_Workflow GATK4_Variant_Annotation_Workflow Public

    Code for reproducing and adapting a GATK4 pipeline for variant calling, annotation, and validation, including spiking of a known neurodevelopmental variant.

    Python