Linumpy is the main library supporting research and development at the Laboratoire d'Imagerie Numérique, Neurophotonique et Microscopie (LINUM).
Linumpy contains tools and utilities to quickly work with serial histology and microscopy data. Those tools implement the recommended workflows and parameters used in the lab.
Although a version of the library is available on PyPI, it has not been updated in a while. We highly discourage its use.
The library is tested for python 3.12. To install the library, clone the repository, change directory to the repository root and then install it with the command below:
pip install .
For development, use this command instead:
pip install -e .
We highly recommend working in a Python Virtual Environment.
If the installation fails when building wheels for asciitree, define the following environment variable:
SETUPTOOLS_USE_DISTUTILS=stdlib
before installing (see issue #45).
To execute the scripts, you can use the following command:
linum_view_omezarr.py --help