Synopsis

Experiment where we contstruct the full context trees corresponding to the exome and corresponding to the genome. Then we apply the models for compression on each separate sequence and store the performance.

Modules summary

• Pmodel.py - parser for constructing the model corresponding to input files
• Papply.py - parser for applying given models to input files and storing the results
• Pprintrecords.py - parser for testing some basic functions

Dependencies

For this experiment we need packages: contexttree, DNAseqhandling