Goal: make classes in python that can be used for the tree modeling
Parent class is tree
Then children are full tree or map tree or ctw tree
In this folder:
contexttree : the class
constructtree : parser for calling from terminal to construct tree models from fasta files and store them
comparetrees : parser for calling from terminal to load the constructed tree models and compare them based on divergence
Documentation:
Git manual : https://git-scm.com/docs
F. M. J. Willems, Y. M. Shtarkov, and T. J. Tjalkens, “Reflections on ‘The Context-Tree Weighting Method: Basic Properties,’” IEEE Trans. Inf. Theory, vol. 41, no. 3, pp. 653–664, 1997.