Axom 0.15.0 Release

.agents/skills

@@ -0,0 +1 @@
+../skills

.github/hubcast.yml

@@ -0,0 +1,28 @@
+Repo:
+  # Required: organization or user that owns the repo on the destination forge
+  dest_org: axom
+
+  # Required: name of the destination repository
+  dest_name: axom
+
+  # Optional: name of the CI check as reported back to GitHub (default: gitlab-ci)
+  check_name: gitlab-ci
+
+  # Optional: granularity of CI statuses reported to GitHub (default: [pipeline])
+  # Set to [pipeline] for overall pipeline status only
+  # Set to [jobs] for individual job statuses only
+  # Set to [pipeline, jobs] to report both
+  check_types: [pipeline, jobs]
+
+  # Optional: delete branches from destination when source PR is closed (default: true)
+  delete_closed: true
+
+  # Optional: sync draft PRs/MRs (default: true)
+  sync_drafts: true
+
+  # Optional: post message when draft sync is disabled (default: true)
+  sync_drafts_msg: true
+
+  # Optional: create GitLab MRs from GitHub PRs
+  # allows developers to create synthetic merge commits using GitLab's merged results pipelines feature
+  create_mr: false

.github/workflows/ci-tests.yml

@@ -12,8 +12,8 @@ concurrency:
   cancel-in-progress: ${{ github.ref != 'refs/heads/develop' }}
 
 env:
-  CLANG_DOCKER_IMAGE: axom/tpls:clang-19_02-17-26_21h-05m
-  GCC_DOCKER_IMAGE: axom/tpls:gcc-13_02-17-26_21h-05m
+  CLANG_DOCKER_IMAGE: axom/tpls:clang-19_08-11-26_21h-12m
+  GCC_DOCKER_IMAGE: axom/tpls:gcc-13_08-11-26_21h-11m
 
 jobs:
   # Hacky solution to reference env variables outside of `run` steps https://stackoverflow.com/a/74217028
@@ -34,10 +34,10 @@ jobs:
       matrix:
         build_type: [ Debug, Release ]
         config:
-        - job_name: gcc@13.3.1, shared, benchmarks, c++20
+        - job_name: gcc@13.3.1, shared, benchmarks
           host_config: gcc@13.3.1.cmake
           compiler_image: ${{ needs.set_image_vars.outputs.gcc_docker_image }}
-          cmake_opts: '-DBUILD_SHARED_LIBS=ON -DBLT_CXX_STD=c++20 -DENABLE_BENCHMARKS:BOOL=ON'
+          cmake_opts: '-DBUILD_SHARED_LIBS=ON -DENABLE_BENCHMARKS:BOOL=ON'
           do_build: 'yes'
           do_benchmarks: 'yes'
         - job_name: gcc@13.3.1, shared, 32bit
@@ -49,7 +49,7 @@ jobs:
         - job_name: llvm@19.0.0, shared, benchmarks, quest regression
           host_config: llvm@19.0.0.cmake
           compiler_image: ${{ needs.set_image_vars.outputs.clang_docker_image }}
-          cmake_opts: '-DBUILD_SHARED_LIBS=ON -DAXOM_QUEST_ENABLE_EXTRA_REGRESSION_TESTS:BOOL=ON -DENABLE_BENCHMARKS:BOOL=ON'
+          cmake_opts: '-DBUILD_SHARED_LIBS=ON -DENABLE_BENCHMARKS:BOOL=ON'
           do_build: 'yes'
           do_benchmarks: 'yes'
         include:
@@ -58,31 +58,31 @@ jobs:
             job_name: llvm@19.0.0, shared, no raja
             host_config: llvm@19.0.0.cmake
             compiler_image: ${{ needs.set_image_vars.outputs.clang_docker_image }}
-            cmake_opts: '-DBUILD_SHARED_LIBS=ON -DAXOM_QUEST_ENABLE_EXTRA_REGRESSION_TESTS:BOOL=ON -DAXOM_ENABLE_MIR:BOOL=OFF -DAXOM_ENABLE_BUMP:BOOL=OFF -U RAJA_DIR'
+            cmake_opts: '-DBUILD_SHARED_LIBS=ON -DAXOM_ENABLE_MIR:BOOL=OFF -DAXOM_ENABLE_BUMP:BOOL=OFF -U RAJA_DIR'
             do_build: 'yes'
             do_benchmarks: 'no'
         - build_type: Debug
           config:
             job_name: llvm@19.0.0, shared, no umpire
             host_config: llvm@19.0.0.cmake
             compiler_image: ${{ needs.set_image_vars.outputs.clang_docker_image }}
-            cmake_opts: '-DBUILD_SHARED_LIBS=ON -DAXOM_QUEST_ENABLE_EXTRA_REGRESSION_TESTS:BOOL=ON -U UMPIRE_DIR'
+            cmake_opts: '-DBUILD_SHARED_LIBS=ON -U UMPIRE_DIR'
             do_build: 'yes'
             do_benchmarks: 'no'
         - build_type: Debug
           config:
             job_name: llvm@19.0.0, shared, no raja and umpire
             host_config: llvm@19.0.0.cmake
             compiler_image: ${{ needs.set_image_vars.outputs.clang_docker_image }}
-            cmake_opts: '-DBUILD_SHARED_LIBS=ON -DAXOM_QUEST_ENABLE_EXTRA_REGRESSION_TESTS:BOOL=ON -DAXOM_ENABLE_MIR:BOOL=OFF -DAXOM_ENABLE_BUMP:BOOL=OFF -U RAJA_DIR -U UMPIRE_DIR'
+            cmake_opts: '-DBUILD_SHARED_LIBS=ON -DAXOM_ENABLE_MIR:BOOL=OFF -DAXOM_ENABLE_BUMP:BOOL=OFF -U RAJA_DIR -U UMPIRE_DIR'
             do_build: 'yes'
             do_benchmarks: 'no'
         - build_type: Debug
           config:
             job_name: llvm@19.0.0, shared, no profiling
             host_config: llvm@19.0.0.cmake
             compiler_image: ${{ needs.set_image_vars.outputs.clang_docker_image }}
-            cmake_opts: '-DBUILD_SHARED_LIBS=ON -DAXOM_QUEST_ENABLE_EXTRA_REGRESSION_TESTS:BOOL=ON -U CALIPER_DIR -U ADIAK_DIR'
+            cmake_opts: '-DBUILD_SHARED_LIBS=ON -U CALIPER_DIR -U ADIAK_DIR'
             do_build: 'yes'
             do_benchmarks: 'no'
     name: ${{ matrix.build_type }} - ${{ matrix.config.job_name }}
@@ -94,13 +94,14 @@ jobs:
       options: --user root
     steps:
       - name: Checkout Axom
-        uses: actions/checkout@v4
+        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6
         with: 
           submodules: recursive
       - name: Print Matrix Variables
         run: |
           echo "build_type     ${{ matrix.build_type }}"
           echo "cmake_opts     ${{ matrix.config.cmake_opts }}"
+          echo "quest_extra_regression_tests ${{ contains(matrix.config.job_name, 'quest regression') && 'ON' || 'OFF' }}"
           echo "compiler_image ${{ matrix.config.compiler_image }}"
           echo "host_config    ${{ matrix.config.host_config }}"
       - name: Build and Test ${{ matrix.build_type }} - ${{ matrix.config.job_name }}
@@ -109,11 +110,11 @@ jobs:
           DO_BUILD=${{ matrix.config.do_build }} \
           DO_BENCHMARKS=${{ matrix.config.do_benchmarks }} \
           HOST_CONFIG=${{ matrix.config.host_config }} \
-          CMAKE_EXTRA_FLAGS=" ${{ matrix.config.cmake_opts }} " \
+          CMAKE_EXTRA_FLAGS=" ${{ matrix.config.cmake_opts }} -DAXOM_QUEST_ENABLE_EXTRA_REGRESSION_TESTS:BOOL=${{ contains(matrix.config.job_name, 'quest regression') && 'ON' || 'OFF' }} " \
           BUILD_TYPE=${{ matrix.build_type }} \
           ./scripts/github-actions/linux-build_and_test.sh
       - name: Upload Test Results
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7
         with:
           name: Test Results ${{ matrix.build_type }} - ${{ matrix.config.job_name }}
           path: "**/Test.xml"
@@ -126,7 +127,7 @@ jobs:
       CMAKE_EXTRA_FLAGS: '-DAXOM_ENABLE_SIDRE:BOOL=OFF -DAXOM_ENABLE_INLET:BOOL=OFF -DAXOM_ENABLE_KLEE:BOOL=OFF -DAXOM_ENABLE_SINA:BOOL=OFF -DAXOM_ENABLE_MIR:BOOL=OFF -DAXOM_ENABLE_BUMP:BOOL=OFF'
     steps:
     - name: Checkout Axom
-      uses: actions/checkout@v4
+      uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6
       with:
         submodules: recursive
     - name: Windows - CMake
@@ -151,7 +152,7 @@ jobs:
       CMAKE_EXTRA_FLAGS: '-DAXOM_ENABLE_SIDRE:BOOL=OFF -DAXOM_ENABLE_INLET:BOOL=OFF -DAXOM_ENABLE_KLEE:BOOL=OFF -DAXOM_ENABLE_SINA:BOOL=OFF -DAXOM_ENABLE_MIR:BOOL=OFF -DAXOM_ENABLE_BUMP:BOOL=OFF'
     steps:
       - name: Checkout Axom
-        uses: actions/checkout@v4
+        uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6
         with:
           submodules: recursive
       - name: macOS - CMake
@@ -187,9 +188,8 @@ jobs:
         HOST_CONFIG: llvm@19.0.0.cmake
     steps:
     - name: Checkout Axom
-      uses: actions/checkout@v4
+      uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6
       with:
         submodules: recursive
     - name: Check ${{ matrix.check_type }}
       run: ./scripts/github-actions/linux-check.sh 
-

.github/workflows/docker_build_tpls.yml

@@ -37,20 +37,20 @@ jobs:
       id: repo_name
 
     - name: Checkout
-      uses: actions/checkout@v4
+      uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6
 
     - name: Set up Docker Buildx
-      uses: docker/setup-buildx-action@v3
+      uses: docker/setup-buildx-action@4d04d5d9486b7bd6fa91e7baf45bbb4f8b9deedd # v4
 
     - name: Login to DockerHub
-      uses: docker/login-action@v3
+      uses: docker/login-action@4907a6ddec9925e35a0a9e82d7399ccc52663121 # v4
       with:
         username: ${{ secrets.DOCKERHUB_USERNAME }}
         password: ${{ secrets.DOCKERHUB_TOKEN }}
 
     - name: Build and push
       id: docker_build
-      uses: docker/build-push-action@v5
+      uses: docker/build-push-action@bcafcacb16a39f128d818304e6c9c0c18556b85f # v7
       with:
         push: true
         tags: ${{ steps.repo_name.outputs.repo_plus_tag }},${{ steps.repo_name.outputs.repo_plus_latest }}
@@ -69,7 +69,7 @@ jobs:
         docker rm extract_hc
 
     - name: Upload hostconfig
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7
       with:
         name: ${{ matrix.compiler }}_hostconfigs
         path: ./extracted_hc/export_hostconfig/*

.github/workflows/test_windows_tpls.yml

@@ -13,7 +13,7 @@ jobs:
   run_uberenv:
     name: Runs ${{ matrix.triplet }} ${{ matrix.cfg }} uberenv with vcpkg
     # The type of runner that the job will run on
-    runs-on: windows-latest
+    runs-on: windows-2022
     strategy:
       fail-fast: false
       matrix:
@@ -29,12 +29,12 @@ jobs:
 
     steps:
     - name: Checkout repo w/ submodules
-      uses: actions/checkout@v4
+      uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6
       with:
         submodules: recursive
 
     - name: Set up python
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6
       with:
         python-version: '3.10'
 
@@ -43,7 +43,7 @@ jobs:
     - name: Run uberenv (${{ matrix.triplet }})
       run: python3 ./scripts/uberenv/uberenv.py --triplet ${{ matrix.triplet }}
     - name: Save Uberenv logs
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7
       if: ${{ always() }}
       with:
         name: uberenv_artifacts_${{ matrix.triplet }}_${{ matrix.cfg }}.zip
@@ -73,7 +73,7 @@ jobs:
         ls
         ctest -C ${{ matrix.cfg }} --no-compress-output -T Test 
     - name: Save CTest logs
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@bbbca2ddaa5d8feaa63e36b76fdaad77386f024f # v7
       if: ${{ always() }}
       with:
         name: ctest_artifacts_${{ matrix.triplet }}_${{ matrix.cfg }}.zip

.gitignore

@@ -21,3 +21,4 @@ uberenv_libs
 .idea
 *.opendb
 scripts/make_local_branch_from_fork_pr.sh
+slirp.out

.gitlab/build_dane.yml

@@ -37,10 +37,11 @@
 
 ####
 # PR Build jobs
-dane-llvm_19_1_3-debug-src:
+dane-llvm_19_1_3-werror-debug-src:
   variables:
     COMPILER: "llvm@19.1.3"
     HOST_CONFIG: "dane-toss_4_x86_64_ib-${COMPILER}.cmake"
+    EXTRA_CMAKE_OPTIONS: "-DENABLE_WARNINGS_AS_ERRORS:BOOL=ON"
   extends: .src_build_on_dane
 
 dane-llvm_19_1_3-release-src:
@@ -51,10 +52,11 @@ dane-llvm_19_1_3-release-src:
     EXTRA_CMAKE_OPTIONS: "-DAXOM_QUEST_ENABLE_EXTRA_REGRESSION_TESTS:BOOL=ON"
   extends: .src_build_on_dane
 
-dane-gcc_13_3_1-src:
+dane-gcc_13_3_1-werror-src:
   variables:
     COMPILER: "gcc@13.3.1"
     HOST_CONFIG: "dane-toss_4_x86_64_ib-${COMPILER}.cmake"
+    EXTRA_CMAKE_OPTIONS: "-DENABLE_WARNINGS_AS_ERRORS:BOOL=ON"
   extends: .src_build_on_dane
 
 dane-sanitizers-gcc_13_3_1-src:
@@ -106,3 +108,14 @@ dane-gcc_13_3_1_no_fortran-full:
 #    COMPILER: "intel@19.0.4"
 #    SPEC: "%${COMPILER}+mfem~cpp14"
 #  extends: .full_build_on_dane
+
+
+####
+# Component Build jobs
+dane-llvm_sina-only:
+  variables:
+    COMPILER: "llvm@19.1.3"
+    HOST_CONFIG: "dane-toss_4_x86_64_ib-${COMPILER}.cmake"
+    EXTRA_CMAKE_OPTIONS: "-DAXOM_ENABLE_ALL_COMPONENTS=OFF -DAXOM_ENABLE_SINA=ON -DAXOM_ENABLE_SLIC=ON"
+    TEST_INSTALLED_TUTORIALS: "OFF"
+  extends: .src_build_on_dane

.gitlab/build_matrix.yml

@@ -8,7 +8,7 @@
 # This is the shared configuration of jobs for matrix
 .on_matrix:
   variables:
-    SCHEDULER_PARAMETERS: "--partition=pci --exclusive=user --deadline=now+1hour -N1 -t ${ALLOC_TIME}"
+    SCHEDULER_PARAMETERS: "--partition=pci --deadline=now+3hour --gpus=1 -t ${ALLOC_TIME}"
   tags:
     - batch
     - matrix
@@ -25,7 +25,7 @@
 # Template
 .src_build_on_matrix:
   variables:
-    ALLOC_TIME: "40"
+    ALLOC_TIME: "55"
   extends: [.src_build_script, .on_matrix, .src_workflow]
   needs: []
 
@@ -42,8 +42,6 @@ matrix-gcc_13_3_1_cuda-src:
     COMPILER: "gcc@13.3.1_cuda"
     HOST_CONFIG: "matrix-toss_4_x86_64_ib-${COMPILER}.cmake"
   extends: .src_build_on_matrix
-  # TODO: Fix unit tests failures
-  allow_failure: true
 
 ####
 # Full Build jobs

.gitlab/build_tioga.yml

@@ -35,17 +35,19 @@
 
 ####
 # PR Build jobs
-tioga-llvm-amdgpu_6_3_1_hip-src:
+# Disable OpenMP to avoid timeout
+tioga-llvm-amdgpu_6_4_3_hip-src:
   variables:
-    COMPILER: "llvm-amdgpu@6.3.1_hip"
+    COMPILER: "llvm-amdgpu@6.4.3_hip"
     HOST_CONFIG: "tioga-toss_4_x86_64_ib_cray-${COMPILER}.cmake"
+    EXTRA_CMAKE_OPTIONS: "-DENABLE_OPENMP:BOOL=OFF"
   extends: .src_build_on_tioga
 
 ####
 # Full Build jobs
-tioga-llvm-amdgpu_6_3_1_hip-full:
+tioga-llvm-amdgpu_6_4_3_hip-full:
   variables:
-    COMPILER: "llvm-amdgpu@6.3.1_hip"
+    COMPILER: "llvm-amdgpu@6.4.3_hip"
     SPEC: "%${COMPILER}~openmp+rocm+mfem+c2c"
-    EXTRASPEC: "amdgpu_target=gfx90a ^hip@6.3.1 ^hsa-rocr-dev@6.3.1 ^raja~openmp+rocm ^umpire~openmp+rocm ^hdf5 cflags=-Wno-int-conversion"
+    EXTRASPEC: "amdgpu_target=gfx90a ^hip@6.4.3 ^hsa-rocr-dev@6.4.3 ^raja~openmp+rocm ^umpire~openmp+rocm ^hdf5 cflags=-Wno-int-conversion"
   extends: .full_build_on_tioga

.gitlab/build_tuolumne.yml

@@ -36,17 +36,17 @@
 
 ####
 # PR Build jobs
-tuolumne-llvm-amdgpu_6_4_3_hip-src:
+tuolumne-llvm-amdgpu_7_2_1_hip-src:
   variables:
-    COMPILER: "llvm-amdgpu@6.4.3_hip"
+    COMPILER: "llvm-amdgpu@7.2.1_hip"
     HOST_CONFIG: "tuolumne-toss_4_x86_64_ib_cray-${COMPILER}.cmake"
   extends: .src_build_on_tuolumne
 
 ####
 # Full Build jobs
-tuolumne-llvm-amdgpu_6_4_3_hip-full:
+tuolumne-llvm-amdgpu_7_2_1_hip-full:
   variables:
-    COMPILER: "llvm-amdgpu@6.4.3_hip"
+    COMPILER: "llvm-amdgpu@7.2.1_hip"
     SPEC: "%${COMPILER}~openmp+rocm+mfem+c2c"
-    EXTRASPEC: "amdgpu_target=gfx90a ^hip@6.4.3 ^hsa-rocr-dev@6.4.3 ^raja~openmp+rocm ^umpire~openmp+rocm ^hdf5 cflags=-Wno-int-conversion"
+    EXTRASPEC: "amdgpu_target=gfx90a ^hip@7.2.1 ^hsa-rocr-dev@7.2.1 ^raja~openmp+rocm ^umpire~openmp+rocm ^hdf5 cflags=-Wno-int-conversion"
   extends: .full_build_on_tuolumne

.mailmap

@@ -3,6 +3,8 @@ Adam J. Kunen <kunen1@llnl.gov>                 Adam J. Kunen <kunen1@sierra1626
 Adrien M. Bernede <bernede1@llnl.gov>           Adrien Bernede <51493078+adrienbernede@users.noreply.github.com>
 Aesha Parekh <aeshabparekh@gmail.com>           Aesha Parekh <29237123+aeshapar@users.noreply.github.com>
 Alan Dayton <dayton8@llnl.gov>                  Alan Dayton <6393677+adayton1@users.noreply.github.com>
+Alex Tyler Chapman <chapman39@llnl.gov>         chapman39 <chapman39@llnl.gov>
+Alex Tyler Chapman <chapman39@llnl.gov>         Alex Tyler Chapman <100869159+chapman39@users.noreply.github.com>
 Arlie Capps <capps2@llnl.gov>                   Arlie Capps <capps2@cab669.llnl.gov>
 Arlie Capps <capps2@llnl.gov>                   Arlie Capps <capps2@cab689.llnl.gov>
 Arlie Capps <capps2@llnl.gov>                   Arlie Capps <48997041+agcapps@users.noreply.github.com>
@@ -35,6 +37,7 @@ Jacob Spainhour <Jacob.Spainhour@colorado.edu>  jcs15c <Jacob.Spainhour@colorado
 Jacob Spainhour <Jacob.Spainhour@colorado.edu>  Jacob Spainhour <jcs15c@my.fsu.edu>
 Jacob Spainhour <Jacob.Spainhour@colorado.edu>  Jacob Spainhour <spainhour1@llnl.gov>
 Jamie A. Bramwell <bramwell1@llnl.gov>          Jamie Bramwell <bramwell1@llnl.gov>
+Jason Burmark <burmark1@llnl.gov>               Jason Burmark <MrBurmark@users.noreply.github.com>
 Joe Hennis <hennis1@llnl.gov>                   Hennis <hennis1@luz.llnl.gov>
 Joe Hennis <hennis1@llnl.gov>                   hennis1 <73615573+hennis1@users.noreply.github.com>
 Josh Essman <essman1@llnl.gov>                  Josh Essman <68349992+joshessman-llnl@users.noreply.github.com>

.uberenv_config.json

@@ -4,9 +4,9 @@
 "package_final_phase": "initconfig",
 "package_source_dir": "../..",
 "spack_url": "https://github.com/spack/spack.git",
-"spack_commit": "2e2169d5282d166f63e3ee4db8d4446c43cefa8a",
+"spack_commit": "3e19345b6e12f5ff1b874f4059622fc6a1fd804a",
 "spack_configs_path": "scripts/spack/configs",
-"spack_packages_commit": "17ea6a6d483fc0bde1b2cca96ddaad0a10f2ef69",
+"spack_packages_commit": "4b6b842d494ab86ebef5304e6bfe766aa421a66b",
 "spack_packages_path": "scripts/spack/packages",
 "spack_concretizer": "clingo",
 "vcpkg_url": "https://github.com/microsoft/vcpkg",

CITATION.cff

@@ -10,6 +10,8 @@ authors:
   orcid: "https://orcid.org/0000-0003-0511-2645"
 - family-names: Bergel
   given-names: Guy
+- family-names: Burmark
+  given-names: Jason
 - family-names: Carson
   given-names: Robert
 - family-names: Corbett