Bump xlrd from 1.2.0 to 2.0.2

.github/workflows/docs.yml

@@ -3,6 +3,8 @@ on:
   workflow_dispatch: {}
   push:
     branches: [main] # branch to trigger deployment
+permissions:
+  contents: write
 jobs:
   build:
     runs-on: ubuntu-latest

.github/workflows/test.yml

@@ -26,7 +26,7 @@ jobs:
           version: 1.8.5
       - name: Install dependencies and run tests
         run: |
-          export CI_CD=1
+          export BIH_HPC=0
           poetry install
           poetry run task coverage-test
       - name: Generate coverage badge

.gitignore

@@ -1,5 +1,7 @@
 *__pycache__
 *.pyc
+dist/
 
 data/*
 !*.gitkeep
+docs/build/

config/plugins/genetic/debug.yaml

@@ -1,6 +1,6 @@
 name: GeneticPlugin
 __init__: __init__
-src: ['all_chrs_extended_tr.fincad100', 'all_chrs_valid.fincad100', 'all_chrs_test.fincad100']
+src: ['genetic_extended_tr', 'genetic_valid', 'genetic_test']
 src_names: ['train', 'valid', 'test']
 genetic_json: 'res/ukb_genetic.json'
 ontology: 'molecular_function'

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "udm"
-version = "0.2.0"
+version = "1.0.0"
 description = "DataModule used for unified access to UKBB data across BIH projects."
 authors = [
     "Luis Herrmann <luismherrmann@gmail.com>",

requirements.txt

@@ -1107,9 +1107,9 @@ wandb==0.13.6 ; python_version >= "3.9" and python_version < "4.0" \
 wcwidth==0.2.5 ; python_version >= "3.9" and python_version < "4.0" \
     --hash=sha256:beb4802a9cebb9144e99086eff703a642a13d6a0052920003a230f3294bbe784 \
     --hash=sha256:c4d647b99872929fdb7bdcaa4fbe7f01413ed3d98077df798530e5b04f116c83
-xlrd==1.2.0 ; python_version >= "3.9" and python_version < "4.0" \
-    --hash=sha256:546eb36cee8db40c3eaa46c351e67ffee6eeb5fa2650b71bc4c758a29a1b29b2 \
-    --hash=sha256:e551fb498759fa3a5384a94ccd4c3c02eb7c00ea424426e212ac0c57be9dfbde
+xlrd==2.0.2 ; python_version >= "3.9" and python_version < "4.0" \
+    --hash=sha256:08b5e25de58f21ce71dc7db3b3b8106c1fa776f3024c54e45b45b374e89234c9 \
+    --hash=sha256:ea762c3d29f4cca48d82df517b6d89fbce4db3107f9d78713e48cd321d5c9aa9
 xlsxwriter==3.0.3 ; python_version >= "3.9" and python_version < "4.0" \
     --hash=sha256:df0aefe5137478d206847eccf9f114715e42aaea077e6a48d0e8a2152e983010 \
     --hash=sha256:e89f4a1d2fa2c9ea15cde77de95cd3fd8b0345d0efb3964623f395c8c4988b7f