Bugfix/sap 11534 handle clnhgvs using measure set name#58

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kevin-dunnicliffe wants to merge 23 commits into

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Congenica:bugfix/SAP-11534_handle_CLNHGVS_using_MeasureSet_name

Commits on May 10, 2018

Added absolute paths for scripts so that pipeline can be run in a docker container
jonkerry
committed

Commits on May 31, 2018

Changes to column names and introduction of dbsnp by parsing of rsID from XML file. SAP-4037
jonkerry
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Added "type" in merge and to the final list of headers. SAP-4037
jonkerry
committed

Commits on Jun 7, 2018

Commits on Feb 5, 2019

SAP-7990 : Modify XML parser to include variants with non-standard VCF field names
jonkerry
committed

Commits on Feb 14, 2019

Merge pull request #12 from Congenica/feature/SAP-7990_include_skipped_indels
jonkerry
authored

Commits on Feb 15, 2019

Commits on Feb 21, 2019

Commits on Feb 25, 2019

Commits on Feb 26, 2019

Commits on Mar 5, 2019

SAP-8433 : Add pathogenicity mapping for old terms
jonkerry
committed

Commits on Mar 6, 2019

Commits on Mar 7, 2019

Commits on Mar 11, 2019

Merge pull request #19 from Congenica/feature/SAP-8360_cvl_description_from_vcf_header
jonkerry
authored

Commits on Oct 28, 2019

SAP-11534 : set CLNGHVS field to var_name as fallback
kevin-dunnicliffe
committed

Commits on Nov 1, 2019

SAP-11534 : improve clnghvs handling by fallback to MeasureSet.name
kevin-dunnicliffe
committed