Issues

• Migrate to Python 3.12 (conda-forge now requires Python ≥3.11): fix scipy ≥1.16 underflow error and ete3 cgi import

  matsengrp/gctree#134 · Filter by author willdumm opened on Oct 8, 2026

• Issues with GCTree simulation

  matsengrp/gctree#133 · Filter by author AbelFresneau opened on May 9, 2025
  1

• Extreme Runtime

  matsengrp/gctree#124 · Filter by author jianche6liu opened on Feb 25, 2024
  5

• Rethink isotype inference

  matsengrp/gctree#116 · Filter by author willdumm opened on May 30, 2023

• Allow all ranking stats to be computed on individual CollapsedTrees

  Next Release
  matsengrp/gctree#109 · Filter by author willdumm opened on Oct 13, 2022
  1

• to support amino acids sequences

  matsengrp/gctree#108 · Filter by author cjhong opened on Oct 7, 2022
  1

• Add option to recover all top-ranked trees instead of sampling from topology classes

  Next Release
  matsengrp/gctree#107 · Filter by author willdumm opened on Oct 4, 2022

• gctree infer with --tree-stats argument does not write pickled tree outputs

  Next Release
  matsengrp/gctree#106 · Filter by author willdumm opened on Oct 4, 2022
  1

• interface with SAMM or bypass Galton branching

  matsengrp/gctree#104 · Filter by author Lan-h opened on Sep 16, 2022
  7

• Jumble parameter for tree space search should be user configurable

  matsengrp/gctree#101 · Filter by author wsdewitt opened on Jun 15, 2022
  6

• local branching metric harmonization

  matsengrp/gctree#99 · Filter by author wsdewitt opened on Jun 10, 2022

• Errors installing PyQt5 dependency on ARM Mac using pip

  matsengrp/gctree#95 · Filter by author wsdewitt opened on May 18, 2022

• Ability to count reversions

  matsengrp/gctree#90 · Filter by author matsen opened on May 11, 2022
  1

  

• arbitrary branching model

  matsengrp/gctree#10 · Filter by author wsdewitt opened on Nov 29, 2016