Issues

• Fail loudly on unmatched match-keys in the fallback mutation-merge modes

  bug
  matsengrp/olmsted-cli#55 · Filter by author matsen opened on Oct 9, 2026
  

• AIRR-C v2 ingest path has no custom-field passthrough (unlike PCP/Olmsted JSON)

  enhancement
  matsengrp/olmsted-cli#51 · Filter by author davidrich27 opened on Aug 23, 2026

• Update stale airr-standards submodule pin, or remove the dead official-schema validation code

  maintenance
  matsengrp/olmsted-cli#50 · Filter by author davidrich27 opened on Aug 23, 2026

• Unify mean_mut_freq / tree-metrics computation into one post-conversion pass

  maintenance
  matsengrp/olmsted-cli#41 · Filter by author davidrich27 opened on Aug 5, 2026

• Publish olmsted-cli to PyPI and move beyond alpha status

  maintenance
  matsengrp/olmsted-cli#30 · Filter by author matsen opened on Jun 7, 2026

• Streaming finalize: replicate auto-mutation-demotion from generate_default_config

  maintenance
  matsengrp/olmsted-cli#28 · Filter by author davidrich27 opened on May 19, 2026

• Compute clone-level aggregates from mutation-level data

  enhancement
  matsengrp/olmsted-cli#14 · Filter by author davidrich27 opened on Apr 10, 2026

• Publish standalone schema files for the Olmsted AIRR extensions

  documentation
  matsengrp/olmsted-cli#11 · Filter by author matsen opened on Apr 3, 2026