Table of Contents

1. Description
2. Includes
3. Usage
   1. Install Docker
   2. Clone docker image
   3. Create and run docker container
   4. Or build your own image
4. Resources

Description

WORK IN PROGRESS

Dockerfile to create a docker image containing open source mritools for data handling, reconstruction and post-processing

Includes

• ubuntu (latest = 18.04 LTS)
• anaconda-python (Anaconda3-5.3.0-Linux-x86₆₄)
  • pydicom
  • nibabel
  • SimpleITK
  • matplotlib2tikz
• bart (v0.4.03)
• ismrmrd (v1.4)
• ismrmrd-python-tools
• ismrmrd-python
• philips_toismrmrd
• dcm2niix

Usage

Install Docker

Get Started with Docker | Docker

Clone docker image

docker pull maxdiefenbach/mritools

Create and run docker container

docker run -ti mritools

Or build your own image

tbc …

Resources

• Best practices for writing Dockerfiles | Docker Documentation
• Gotchas in Writing Dockerfile | kim hirokuni
• Dockerizing a Simple Python Process - DEV Community