This repository is used to build openpipelines.bio.
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Install quarto v1.5.57, R >= 4.4 and Python >= 3.10.
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Clone this repo with
git clone --recursive git@github.com:openpipelines-bio/website.git -
Run
Rscript -e 'install.packages("renv")'if you don't have{renv}installed. -
Run
Rscript -e 'renv::restore()'to install R and Python packages recorded in the renv lockfile (renv.lock). This might take a while.
Run quarto preview to render a preview version of the site.
To reduce the time it takes to render the site, quarto is set to not execute runnable code by default. As such, some content may be missing -- mostly the output of code blocks. Use quarto preview --profile evaluate_code to evaluate runnable code blocks.
Tip: When you already did a render or preview with or without the profile argument, you need to remove the _site and _freeze directories to see a change by executing rm -r _site _freeze
Run quarto render --profile evaluate_code to render the site.