Skip to content

Releases: mdshw5/simplesam

v0.1.4.1

21 Jun 02:17
cfc2a21

Choose a tag to compare

What's Changed

  • Merge pull request #22 from mdshw5/develop by @mdshw5 in #24
  • Add pileup script and move tests to Github Actions by @mdshw5 in #25
  • Add description of pileup.py to README by @mdshw5 in #26

Full Changelog: v0.1.4.0...v0.1.4.1

v0.1.4.0

29 Jun 02:25
3d0c873

Choose a tag to compare

Add support for appending to existing SAM files (#21). (thanks @xizhihui )

v0.1.3.2

22 May 02:03
2cd82f5

Choose a tag to compare

  • fixes an issue with StopIteration in a generator for python 3.7 (#20)

v0.1.3.1

17 Sep 08:23
e21ffaa

Choose a tag to compare

  • Minor fix for Sam.coords documentation (#19)

v0.1.3

05 Oct 20:53
235fac2

Choose a tag to compare

  • Sam.tags is now available immediately after object initialization. Previously Sam.tags evaluated as None unless a call had been made to Sam.__get__ or Sam.__set__. (#16)

v0.1.2

18 Oct 15:35

Choose a tag to compare

  • Added better support for SAMv1.4+ CIGAR operations (thanks @bede)
  • Added Writer.close() and Reader.close() methods (#12)

v0.1.1

17 Jul 17:57

Choose a tag to compare

First release containing documentation!

v0.0.5

16 Apr 15:01

Choose a tag to compare

  • Adds ability to define samtools path (closes #11)

v0.0.4

07 Jun 18:54

Choose a tag to compare

v0.0.4 Pre-release
Pre-release

Remove argparse requirement.

v0.0.3

15 Apr 17:26

Choose a tag to compare

v0.0.3 Pre-release
Pre-release

Improve performance when reading from BAM files.