All pull requests

Pull requests

• Bump the python-dependencies group with 2 updates

  dependenciespython:uv
  #3578·dependabot[bot] opened Oct 21, 2026Bot·

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• Bump the github-actions group with 3 updates

  dependenciesgithub_actions
  #3577·dependabot[bot] opened Oct 21, 2026Bot·

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• NEEDS MIGRATOR: Fix the EFO and MCO prefix expansions

  #3573·turbomam opened Oct 20, 2026Member·

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  3

• Report misspellings in schema source and docs with typos

  #3543·turbomam opened Oct 15, 2026Member·

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  4

• PHA4GE / NMDC schema alignment

  #3533·sujaypatil96 opened Oct 15, 2026Collaborator·2 of 3 tasks·

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  5

• Validate example data against the source schema, not the committed artifact

  #3518·turbomam opened Oct 13, 2026Member·

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  1

  2

• Don't allow element names that are spelled or pronounced alike

  #3505·turbomam opened Oct 8, 2026Member·

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  1

  27

  

• Report files under assets/ that nothing uses, and fail CI on new ones

  #3423·turbomam opened Sep 16, 2026Member·

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  1

  24

• Attach ontology_class_set to Database and add the missing ontology_relation_set slot

  #3408·turbomam opened Sep 11, 2026Member·

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  1

  7

• Move provenance_metadata onto NamedThing

  do not merge
  #3231·turbomam opened Jun 26, 2026Member·

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  1

  4

• Draft ProvenanceObject class and has_instance_provenance slot (#3085)

  do not merge
  #3086·turbomam opened May 20, 2026Member·

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  7

• Define ProcessedSample structurally as MaterialProcessing output (#3051)

  #3081·turbomam opened May 18, 2026Member·

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  1

  13

• Add first_of_class_in_chain convenience flag on ProcessedSample, OrganismSample, and DataObject (#3050)

  do not merge
  #3080·turbomam opened May 18, 2026Member·

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  1

  10

• Draft: SlotLevelProvenance class + raw-vs-coerced pattern doc

  do not merge
  #3071·turbomam opened May 14, 2026Member·

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  6

• Draft: Define GeoLocationNameValue class for structured geo_loc_name

  #2308·turbomam opened Dec 19, 2024Member·

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  14