Name		Name	Last commit message	Last commit date
1main_aa_subst_trends		1main_aa_subst_trends
PCAWG		PCAWG
data		data
external_datasets		external_datasets
vertebrates_aa_subst		vertebrates_aa_subst
.gitignore		.gitignore
NC_012920.1.gb		NC_012920.1.gb
README.md		README.md
aa_flow_by_gene_megatree.pdf		aa_flow_by_gene_megatree.pdf
analyse.ipynb		analyse.ipynb
apply_neutral_model_all_datasets.py		apply_neutral_model_all_datasets.py
apply_neutral_model_human_megatree.py		apply_neutral_model_human_megatree.py
apply_random_model.py		apply_random_model.py
datasets_fit_metrics.csv		datasets_fit_metrics.csv
derive_obs_aa_freqs.py		derive_obs_aa_freqs.py
gene_strand_forecast.ipynb		gene_strand_forecast.ipynb
human_germline.ipynb		human_germline.ipynb
human_germline_mutation_rate_sliding_window.pdf		human_germline_mutation_rate_sliding_window.pdf
human_germline_r2_vs_mut_counts.pdf		human_germline_r2_vs_mut_counts.pdf
megatree_fit_metrics.csv		megatree_fit_metrics.csv
neutral_model_fit_megatree.pdf		neutral_model_fit_megatree.pdf
pca_aa_freqs_megatree.pdf		pca_aa_freqs_megatree.pdf
pca_aa_freqs_megatree_biplot.pdf		pca_aa_freqs_megatree_biplot.pdf
pyrightconfig.json		pyrightconfig.json
req.dev.txt		req.dev.txt
requirements.txt		requirements.txt
utils.py		utils.py
vert_species_fit.ipynb		vert_species_fit.ipynb

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AminoAcidShift

Amino acid shift in mitochondrial proteins is shaped by mtDNA mutational spectrum

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