Refactor plotting functions, improve tests, and update README - #16

Merged

kpotoh merged 21 commits into

Jul 16, 2026

Commits on Mar 31, 2025

src-layout and manual upload of 14 version
kpotoh
committed
eb568c6

Commits on Feb 19, 2026

Commits on Feb 20, 2026

Initial plan
Copilot
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57ece97
Fix broken tests, add docstrings, improve test coverage

Copilot
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kpotoh
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53f0356
Address code review: improve assertion messages and docstring pattern notation

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kpotoh
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973023e
Revert sbs_orders.py to commented state; fix KK label support in plot_mutspec

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kpotoh
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759695c
Improve README with comprehensive user guide based on chordata notebooks

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kpotoh
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a19e3f8
Initial plan
Copilot
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d844e38
Merge pull request #14 from mitoclub/copilot/improve-tests-and-docs
kpotoh
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81fd6e2
Replace ete3 with custom PhyloNode/PhyloTree using BioPython

Copilot
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kpotoh
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78c7b98
Rename PhyloNode/PhyloTree to TreeNode/Tree; add ete3 comparison tests

Copilot
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kpotoh
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1d4e725
Merge branch 'modify-package' into copilot/remove-ete3-replace-with-biopython
kpotoh
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8fe8717
Merge pull request #15 from mitoclub/copilot/remove-ete3-replace-with-biopython
kpotoh
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14f7b8a
check tests after ete3 replacement
kpotoh
committed
2d83677

Commits on Jul 15, 2026

lints and some devs before new changes
kpotoh
committed
7402a36

Commits on Jul 16, 2026