TCGA matchmaker

Matching a gene expression profile in TCGA cancer samples

Input: gene expression profile for a sample, one column matrix with the sample on the column and genes on the rows and gene expression values for each of the genes as the data link to TCGA to download the sample profiles or a matrix with the sample profiles to check for a match
Output: Ids and scores for highest matching TCGA samples.

To build the package use the following command in the top level folder of the cloned repo: python -m build

To build and run a docker container that has TCGA_matchker follow the steps below

This runs a simple TCGA_matchmaker analysis example.

have the docker engine running
have the TCGA_mm_docker folder on your computer
build the image (run the following command in a terminal in the TCGA_mm_docker folder):

docker build --rm -t tcgamm_image .

docker run --rm tcgamm_image