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  1. smolcode smolcode Public

    A minimal, dependency-free, hackable CLI coding agent.

    Python

  2. TransforKmers TransforKmers Public archive

    [WIP] A task-agnostic facility to pretrain/finetune/use a Transformer based model to classify your biological sequences.

    Jupyter Notebook 4

  3. ANNEXA ANNEXA Public archive

    Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs), and count gene/transcript expression levels.

    Python 5