You need to a jira-application.properties file insert into a WAR file of Atlassian JIRA.
$ echo "jira.home = /var/atlassian/application-data/jira" > WEB-INF/classes/jira-application.properties
$ jar uf jira.war WEB-INF
.
├── docker-compose.yml
├── Dockerfile
├── jira.war
└── server.xml
jira.war is a WAR file of Atlassian JIRA.
server.xml is a tomcat configuration file.
Run docker-command.