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mrc-ide / priority-pathogens Public

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RJSheppard edited this page Jan 22, 2026 · 98 revisions

Checking previous text

Wiki pages Pages 17

Home
Analysis work flow
Article extractions
Article inclusion & exclusion
Best practices and recommendations
Example extractions
Model extractions
Oropouche virus
Outbreak extractions
Parameter Data
Parameter extractions
Priority pathogens website
Quality Assessment
REDCap extraction form
Search terms
Sharing orderly outputs across users within Imperial
Variability vs Uncertainty

Article extractions

Model extractions

Outbreak extractions

Parameter extractions

Genomic
Growth rate
Doubling/halving time
Attack rates
Reproduction number
Overdispersion
Relative contributions
Delays
Severity
Miscarriage probability
Zika congenital syndrome (microcephaly)
Seroprevalence
Risk Factors

Quality assessment

Model QA
Outbreak QA
Genomic
Growth rate
Doubling/halving time
Attack rates
Reproduction number
Overdispersion
Relative contributions
Delays (human and/or mosquito)
Severity
Miscarriage probability/Zika congenital syndrome (microcephaly)/
Seroprevalence
Risk Factors

Example extractions

Variability vs uncertainty

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