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Merged
mtpenny merged 1 commit into from
Nov 4, 2025
Merged

Add support for multiple sources in lightcurve generation and plotting #8

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14 changes: 7 additions & 7 deletions smoke_test/assets/sources/smoke_source_binary_catalog.dat
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
R062 Z087 Y106 J129 W146 H158 F184 K213 2MASS_Ks 2MASS_J 2MASS_H Bessell_U Bessell_B Bessell_V Bessell_I Bessell_R Kepler_Kp TESS DECam_z DECam_u DECam_g DECam_r DECam_i DECam_Y Gaia_G_EDR3 Gaia_BP_EDR3 Gaia_RP_EDR3 VISTA_Z VISTA_Y VISTA_J VISTA_H VISTA_Ks mul mub Vr U V W iMass CL age Teff logg pop Mass Mbol Radius [Fe/H] l b RA2000.0 DEC2000.0 Dist x y z A_Ks [alpha/Fe] ID Is_Binary primary_ID combined_logP
2.5212534e+01 2.3437151e+01 2.2946926e+01 2.2698885e+01 2.2737316e+01 2.2564209e+01 2.2718139e+01 2.2750813e+01 2.0916308e+01 2.1813254e+01 2.1137727e+01 2.8960719e+01 2.7692111e+01 2.6146455e+01 2.3327938e+01 2.4879330e+01 2.4833463e+01 2.3528349e+01 2.3269717e+01 2.8460170e+01 2.6830101e+01 2.5344168e+01 2.3886079e+01 2.3095472e+01 2.4810155e+01 2.6388821e+01 2.3603958e+01 2.2911913e+01 2.2447639e+01 2.1762028e+01 2.1155567e+01 2.0943504e+01 -1.0430274e+01 2.9710474e+00 5.3098679e+01 6.6088945e+01 1.0138185e+02 4.8754663e+01 1.3530942e-01 0.0000000e+00 1.0000000e+01 3.1466277e+03 5.1644453e+00 0.0000000e+00 1.3530814e-01 1.1389806e+01 1.5813397e-01 -9.4970712e-02 3.2006745e-03 4.2958514e-03 2.6640150e+02 -2.8931190e+01 2.9168337e+00 -5.2611722e+00 1.6294106e-04 1.1155346e-02 0.0000000e+00 0 1 1 1 1.0
1.8280023e+01 1.8068850e+01 1.8049266e+01 1.8055254e+01 1.8117239e+01 1.8116642e+01 1.8302014e+01 1.8562267e+01 1.6727762e+01 1.7164161e+01 1.6776748e+01 1.9448572e+01 1.9185598e+01 1.8437426e+01 1.7656769e+01 1.8021182e+01 1.8199912e+01 1.7754535e+01 1.8063731e+01 2.0042738e+01 1.8749093e+01 1.8215518e+01 1.8096851e+01 1.8045478e+01 1.8284698e+01 1.8650127e+01 1.7755000e+01 1.7576242e+01 1.7436794e+01 1.7135492e+01 1.6781831e+01 1.6731542e+01 5.4187211e-02 3.8186918e+00 -1.1389063e+02 -1.0081186e+02 2.4678124e+02 9.1264341e+01 9.0224882e-01 0.0000000e+00 1.0000000e+01 5.4611661e+03 4.4174184e+00 0.0000000e+00 9.0202770e-01 5.0507352e+00 9.7265615e-01 6.4701074e-02 3.5999997e+02 -3.7644077e-03 2.6640744e+02 -2.8938149e+01 4.5983030e+00 -3.5797075e+00 -2.6445424e-06 7.1391942e-03 0.0000000e+00 0 2 2 1 1.0
2.7189580e+01 2.4975054e+01 2.4260565e+01 2.3968756e+01 2.4030988e+01 2.3845912e+01 2.4039567e+01 2.3989889e+01 2.2155384e+01 2.3048865e+01 2.2390443e+01 3.1118061e+01 3.0030954e+01 2.8490833e+01 2.5036992e+01 2.6885617e+01 2.6681963e+01 2.5118838e+01 2.4731204e+01 3.0059395e+01 2.9036582e+01 2.7540074e+01 2.5635858e+01 2.4463607e+01 2.6583638e+01 2.8723106e+01 2.5259802e+01 2.4469663e+01 2.3817850e+01 2.2989283e+01 2.2414511e+01 2.2190391e+01 -6.5516244e+00 1.1716060e+00 -7.9343188e+01 -6.6373337e+01 9.2833791e+01 3.5265923e+01 1.4345340e-01 0.0000000e+00 1.0000000e+01 2.9315876e+03 5.1305404e+00 0.0000000e+00 1.4345205e-01 1.1600987e+01 1.6530046e-01 1.6760650e-01 4.3851388e-03 -2.5059108e-03 2.6640884e+02 -2.8933722e+01 4.9185785e+00 -3.2594326e+00 3.7644395e-04 6.5604172e-03 0.0000000e+00 0 3 0 0 0.0
2.6432685e+01 2.4491108e+01 2.3915671e+01 2.3656481e+01 2.3706363e+01 2.3533906e+01 2.3701900e+01 2.3710237e+01 2.1875732e+01 2.2758205e+01 2.2099233e+01 3.0094746e+01 2.8982746e+01 2.7485130e+01 2.4443064e+01 2.6113111e+01 2.6006401e+01 2.4604554e+01 2.4293562e+01 2.9474944e+01 2.8101540e+01 2.6642829e+01 2.5017614e+01 2.4081378e+01 2.5955676e+01 2.7725745e+01 2.4703953e+01 2.3972942e+01 2.3432310e+01 2.2704340e+01 2.2119082e+01 2.1905447e+01 -7.7780939e+00 -2.3327942e-01 -2.3962213e+01 -1.1064623e+01 6.4507357e+01 2.3963224e+00 1.5178442e-01 0.0000000e+00 1.0000000e+01 3.0756073e+03 5.1140763e+00 0.0000000e+00 1.5178288e-01 1.1246362e+01 1.7682473e-01 8.4404856e-02 2.6359830e-03 5.2891509e-03 2.6640020e+02 -2.8931154e+01 4.9113800e+00 -3.2666297e+00 2.2595581e-04 7.2438851e-03 0.0000000e+00 0 4 0 0 0.0
4.7021105e+01 3.4017351e+01 2.8549183e+01 2.4842273e+01 2.4605516e+01 2.2513490e+01 2.1428106e+01 2.0791151e+01 1.8956646e+01 2.4518952e+01 2.0729039e+01 7.5145964e+01 6.6431818e+01 5.2662162e+01 3.7022015e+01 4.5436628e+01 4.8035999e+01 4.0072213e+01 3.2192061e+01 7.2625737e+01 6.1205873e+01 4.5835721e+01 3.8642084e+01 2.9947132e+01 4.4114127e+01 5.4168672e+01 3.7180335e+01 3.2877854e+01 2.8552558e+01 2.4147819e+01 2.0674371e+01 1.8947702e+01 -4.6698104e+00 -2.4039011e+00 -1.4320101e+02 -1.3046019e+02 1.3330771e+02 -4.9805759e+01 8.1309438e-01 0.0000000e+00 1.0000000e+01 6.0603449e+03 4.3935837e+00 0.0000000e+00 8.1280571e-01 4.6548136e+00 9.4780662e-01 -7.9940091e-01 3.5997144e+02 1.6664060e-02 2.6637053e+02 -2.8951850e+01 5.0758087e+00 -3.1022000e+00 -2.5300458e-03 7.9249568e-03 1.9693590e+01 0 5 1 5 2.0
4.7021105e+01 3.4017351e+01 2.8549183e+01 2.4842273e+01 2.4605516e+01 2.2513490e+01 2.1428106e+01 2.0791151e+01 1.8956646e+01 2.4518952e+01 2.0729039e+01 7.5145964e+01 6.6431818e+01 5.2662162e+01 3.7022015e+01 4.5436628e+01 4.8035999e+01 4.0072213e+01 3.2192061e+01 7.2625737e+01 6.1205873e+01 4.5835721e+01 3.8642084e+01 2.9947132e+01 4.4114127e+01 5.4168672e+01 3.7180335e+01 3.2877854e+01 2.8552558e+01 2.4147819e+01 2.0674371e+01 1.8947702e+01 -4.6698104e+00 -2.4039011e+00 -1.4320101e+02 -1.3046019e+02 1.3330771e+02 -4.9805759e+01 8.1309438e-01 0.0000000e+00 1.0000000e+01 6.0603449e+03 4.3935837e+00 0.0000000e+00 8.1280571e-01 4.6548136e+00 9.4780662e-01 -7.9940091e-01 3.5997144e+02 1.6664060e-02 2.6637053e+02 -2.8951850e+01 5.0758087e+00 -3.1022000e+00 -2.5300458e-03 7.9249568e-03 1.9693590e+01 0 6 2 5 2.0
R062 Z087 Y106 J129 W146 H158 F184 K213 2MASS_Ks 2MASS_J 2MASS_H Bessell_U Bessell_B Bessell_V Bessell_I Bessell_R Kepler_Kp TESS DECam_z DECam_u DECam_g DECam_r DECam_i DECam_Y Gaia_G_EDR3 Gaia_BP_EDR3 Gaia_RP_EDR3 VISTA_Z VISTA_Y VISTA_J VISTA_H VISTA_Ks mul mub Vr U V W iMass CL age Teff logg pop Mass Mbol Radius [Fe/H] l b RA2000.0 DEC2000.0 Dist x y z A_Ks [alpha/Fe] ID Is_Binary primary_ID combined_logP
2.5212534e+01 2.3437151e+01 2.2946926e+01 2.2698885e+01 2.2737316e+01 2.2564209e+01 2.2718139e+01 2.2750813e+01 2.0916308e+01 2.1813254e+01 2.1137727e+01 2.8960719e+01 2.7692111e+01 2.6146455e+01 2.3327938e+01 2.4879330e+01 2.4833463e+01 2.3528349e+01 2.3269717e+01 2.8460170e+01 2.6830101e+01 2.5344168e+01 2.3886079e+01 2.3095472e+01 2.4810155e+01 2.6388821e+01 2.3603958e+01 2.2911913e+01 2.2447639e+01 2.1762028e+01 2.1155567e+01 2.0943504e+01 5.4187211e-02 3.8186918e+00 -1.1389063e+02 -1.0081186e+02 2.4678124e+02 9.1264341e+01 1.3530942e-01 0.0000000e+00 1.0000000e+01 3.1466277e+03 5.1644453e+00 0.0000000e+00 1.3530814e-01 1.1389806e+01 1.5813397e-01 -9.4970712e-02 3.2006745e-03 -3.7644077e-03 2.6640150e+02 -2.8931190e+01 2.9168337e+00 -5.2611722e+00 1.6294106e-04 1.1155346e-02 0.0000000e+00 0 1 1 1 1.0
1.8280023e+01 1.8068850e+01 1.8049266e+01 1.8055254e+01 1.8117239e+01 1.8116642e+01 1.8302014e+01 1.8562267e+01 1.6727762e+01 1.7164161e+01 1.6776748e+01 1.9448572e+01 1.9185598e+01 1.8437426e+01 1.7656769e+01 1.8021182e+01 1.8199912e+01 1.7754535e+01 1.8063731e+01 2.0042738e+01 1.8749093e+01 1.8215518e+01 1.8096851e+01 1.8045478e+01 1.8284698e+01 1.8650127e+01 1.7755000e+01 1.7576242e+01 1.7436794e+01 1.7135492e+01 1.6781831e+01 1.6731542e+01 5.4187211e-02 3.8186918e+00 -1.1389063e+02 -1.0081186e+02 2.4678124e+02 9.1264341e+01 9.0224882e-01 0.0000000e+00 1.0000000e+01 5.4611661e+03 4.4174184e+00 0.0000000e+00 9.0202770e-01 5.0507352e+00 9.7265615e-01 6.4701074e-02 3.5999997e+02 -3.7644077e-03 2.6640744e+02 -2.8938149e+01 4.5983030e+00 -3.5797075e+00 -2.6445424e-06 7.1391942e-03 0.0000000e+00 0 2 2 1 1.0
2.7189580e+01 2.4975054e+01 2.4260565e+01 2.3968756e+01 2.4030988e+01 2.3845912e+01 2.4039567e+01 2.3989889e+01 2.2155384e+01 2.3048865e+01 2.2390443e+01 3.1118061e+01 3.0030954e+01 2.8490833e+01 2.5036992e+01 2.6885617e+01 2.6681963e+01 2.5118838e+01 2.4731204e+01 3.0059395e+01 2.9036582e+01 2.7540074e+01 2.5635858e+01 2.4463607e+01 2.6583638e+01 2.8723106e+01 2.5259802e+01 2.4469663e+01 2.3817850e+01 2.2989283e+01 2.2414511e+01 2.2190391e+01 -6.5516244e+00 1.1716060e+00 -7.9343188e+01 -6.6373337e+01 9.2833791e+01 3.5265923e+01 1.4345340e-01 0.0000000e+00 1.0000000e+01 2.9315876e+03 5.1305404e+00 0.0000000e+00 1.4345205e-01 1.1600987e+01 1.6530046e-01 1.6760650e-01 4.3851388e-03 -2.5059108e-03 2.6640884e+02 -2.8933722e+01 4.9185785e+00 -3.2594326e+00 3.7644395e-04 6.5604172e-03 0.0000000e+00 0 3 0 0 0.0
2.6432685e+01 2.4491108e+01 2.3915671e+01 2.3656481e+01 2.3706363e+01 2.3533906e+01 2.3701900e+01 2.3710237e+01 2.1875732e+01 2.2758205e+01 2.2099233e+01 3.0094746e+01 2.8982746e+01 2.7485130e+01 2.4443064e+01 2.6113111e+01 2.6006401e+01 2.4604554e+01 2.4293562e+01 2.9474944e+01 2.8101540e+01 2.6642829e+01 2.5017614e+01 2.4081378e+01 2.5955676e+01 2.7725745e+01 2.4703953e+01 2.3972942e+01 2.3432310e+01 2.2704340e+01 2.2119082e+01 2.1905447e+01 -7.7780939e+00 -2.3327942e-01 -2.3962213e+01 -1.1064623e+01 6.4507357e+01 2.3963224e+00 1.5178442e-01 0.0000000e+00 1.0000000e+01 3.0756073e+03 5.1140763e+00 0.0000000e+00 1.5178288e-01 1.1246362e+01 1.7682473e-01 8.4404856e-02 2.6359830e-03 5.2891509e-03 2.6640020e+02 -2.8931154e+01 4.9113800e+00 -3.2666297e+00 2.2595581e-04 7.2438851e-03 0.0000000e+00 0 4 0 0 0.0
4.7021105e+01 3.4017351e+01 2.8549183e+01 2.4842273e+01 2.4605516e+01 2.2513490e+01 2.1428106e+01 2.0791151e+01 1.8956646e+01 2.4518952e+01 2.0729039e+01 7.5145964e+01 6.6431818e+01 5.2662162e+01 3.7022015e+01 4.5436628e+01 4.8035999e+01 4.0072213e+01 3.2192061e+01 7.2625737e+01 6.1205873e+01 4.5835721e+01 3.8642084e+01 2.9947132e+01 4.4114127e+01 5.4168672e+01 3.7180335e+01 3.2877854e+01 2.8552558e+01 2.4147819e+01 2.0674371e+01 1.8947702e+01 -9.0335610e+00 -2.7360242e+00 -2.0160392e+02 -1.9107442e+02 5.1533963e+01 -4.5152342e+01 8.1309438e-01 0.0000000e+00 1.0000000e+01 6.0603449e+03 4.3935837e+00 0.0000000e+00 8.1280571e-01 4.6548136e+00 9.4780662e-01 -7.9940091e-01 3.5997144e+02 1.6664060e-02 2.6637053e+02 -2.8951850e+01 5.0758087e+00 -3.1022000e+00 -2.5300458e-03 7.9249568e-03 0.0000000e+00 0 5 1 5 3.0
3.1793245e+01 2.7449580e+01 2.5641867e+01 2.4639045e+01 2.4657181e+01 2.4083239e+01 2.4042948e+01 2.3798342e+01 2.1963837e+01 2.3810243e+01 2.2533581e+01 0.0000000e+00 0.0000000e+00 3.4035114e+01 2.8110429e+01 3.1294101e+01 3.1417767e+01 2.8566321e+01 2.6860705e+01 3.7798231e+01 3.5635318e+01 3.2055912e+01 2.8903792e+01 2.6126297e+01 3.0666724e+01 3.4440840e+01 2.8305075e+01 0.0000000e+00 0.0000000e+00 0.0000000e+00 0.0000000e+00 0.0000000e+00 -9.0335610e+00 -2.7360242e+00 -2.0160392e+02 -1.9107442e+02 5.1533963e+01 -4.5152342e+01 2.0027892e-01 0.0000000e+00 1.0000000e+01 2.8605457e+03 5.0486657e+00 0.0000000e+00 2.0027673e-01 1.1224508e+01 2.0647986e-01 3.3736235e-01 3.5979544e+02 1.6664060e-02 2.6785368e+02 -2.9934996e+01 5.0758087e+00 -3.1022000e+00 -2.5300458e-03 7.9249568e-03 0.0000000e+00 0 6 2 5 3.0
146 changes: 145 additions & 1 deletion smoke_test/plotting.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -73,6 +73,78 @@ def _parse_header(lc_file: Path) -> Tuple[List[float] | None, List[float] | None
return planet_vals, event_vals


def _sanity_check_flux_conservation(
lc_file: Path,
true_flux: np.ndarray,
src1_flux: np.ndarray | None,
src2_flux: np.ndarray | None,
abs_tol: float = 1e-5,
) -> None:
"""Check that true_relative_flux ~= src1 + src2 + fblend for a couple of epochs.

This is a strict, non-configurable sanity check. It only runs when both
source1/source2 columns exist and the header contains #fs and #fs2. On
failure it raises SmokeTestError so CI/smoke-test runner fails.
"""
# Only run when both source columns are present
if src1_flux is None or src2_flux is None:
return

fs = None
fs2 = None
with lc_file.open(encoding="utf-8") as header_reader:
for raw in header_reader:
if not raw.startswith("#"):
break
s = raw.strip()
if s.startswith("#fs:"):
parts = s.split()
if len(parts) >= 2:
try:
fs = float(parts[1])
except Exception:
fs = None
elif s.startswith("#fs2:"):
parts = s.split()
if len(parts) >= 2:
try:
fs2 = float(parts[1])
except Exception:
fs2 = None

if fs is None or fs2 is None:
# If header doesn't provide both, skip the strict check
return

fblend = 1.0 - float(fs) - float(fs2)

# choose representative epochs: first epoch and the epoch of peak true flux
try:
peak_idx = int(np.nanargmax(true_flux))
except Exception:
peak_idx = 0

indices = [0]
if peak_idx != 0:
indices.append(int(peak_idx))

for idx in indices:
try:
expected = float(src1_flux[idx]) + float(src2_flux[idx]) + float(fblend)
truev = float(true_flux[idx])
except Exception:
# If indexing or conversion fails, raise an error to surface the issue
raise SmokeTestError(
f"Flux sanity check failed: could not index/convert epoch {idx} in {lc_file.name}"
)
diff = abs(truev - expected)
if diff > abs_tol:
raise SmokeTestError(
f"Flux sanity check failed for {lc_file.name} at epoch index {idx}: true={truev:.8f}, expected={expected:.8f}, abs_diff={diff:.8e}, abs_tol={abs_tol}"
)



def _plot_photometry_only(
lc_file: Path,
output_dir: Path,
Expand All @@ -81,6 +153,8 @@ def _plot_photometry_only(
flux: np.ndarray,
flux_err: np.ndarray,
true_flux: np.ndarray | None,
src1_flux: np.ndarray | None = None,
src2_flux: np.ndarray | None = None,
) -> Path:
fig, ax = plt.subplots(1, 1, figsize=(10, 6))
fig.suptitle(title, fontsize=14)
Expand All @@ -106,6 +180,28 @@ def _plot_photometry_only(
zorder=2,
alpha=0.8,
)
if src1_flux is not None:
ax.plot(
time,
src1_flux,
"-",
linewidth=1.2,
color="magenta",
label="Source 1",
zorder=4,
alpha=0.7,
)
if src2_flux is not None:
ax.plot(
time,
src2_flux,
"-",
linewidth=1.2,
color="gold",
label="Source 2",
zorder=5,
alpha=0.7,
)
ax.axhline(1.0, color="k", linestyle="--", linewidth=1.5, label="Baseline", zorder=3)
ax.set_xlabel("Time (days)")
ax.set_ylabel("Relative Flux")
Expand Down Expand Up @@ -408,6 +504,8 @@ def _render_astrometric_figure(
true_y_vals: np.ndarray | None,
meas_x: np.ndarray | None,
meas_y: np.ndarray | None,
src1_flux: np.ndarray | None = None,
src2_flux: np.ndarray | None = None,
) -> Tuple[Path, Path | None]:
fig, axes = plt.subplots(2, 2, figsize=(12, 10))
fig.suptitle(title, fontsize=14)
Expand Down Expand Up @@ -438,6 +536,28 @@ def _render_astrometric_figure(
zorder=2,
alpha=0.8,
)
if src1_flux is not None:
ax_light.plot(
time,
src1_flux,
"-",
linewidth=1.2,
color="magenta",
label="Source 1",
zorder=4,
alpha=0.7,
)
if src2_flux is not None:
ax_light.plot(
time,
src2_flux,
"-",
linewidth=1.2,
color="gold",
label="Source 2",
zorder=5,
alpha=0.7,
)
ax_light.axhline(
1.0,
color="k",
Expand Down Expand Up @@ -695,6 +815,13 @@ def plot_lightcurves(
if val is not None:
astrometry_expected = str(val).strip().lower() not in {"0", "false", "off"}

# Determine whether MULTIPLE_SOURCES was requested in the parameter file.
multiple_sources_expected = False
if params:
ms = params.get("MULTIPLE_SOURCES")
if ms is not None:
multiple_sources_expected = str(ms).strip().lower() not in {"0", "false", "off"}

for lc_file in lc_files:
planet_vals, event_vals = _parse_header(lc_file)
df = pd.read_csv(lc_file, sep=r"\s+", comment="#")
Expand Down Expand Up @@ -799,8 +926,23 @@ def _optional_column(name: str) -> np.ndarray | None:
f"Smoke test failed: astrometric columns missing in {lc_file.name}"
)

# Extract source flux columns (optional for binary source events)
src1_flux = _optional_column("source1_relative_flux")
src2_flux = _optional_column("source2_relative_flux")

# If the parameter file did not request multiple sources, ignore any
# source1/source2 columns that may nevertheless appear in the output
# (prevents plotting Source 1/Source 2 when MULTIPLE_SOURCES isn't set).
if not multiple_sources_expected:
src1_flux = None
src2_flux = None

# Strict flux-conservation sanity check (non-configurable). Only run
# when multiple sources are expected and both columns are present.
_sanity_check_flux_conservation(lc_file, true_flux, src1_flux, src2_flux)

if not has_astrom:
_plot_photometry_only(lc_file, output_dir, title, time, flux, flux_err, true_flux)
_plot_photometry_only(lc_file, output_dir, title, time, flux, flux_err, true_flux, src1_flux, src2_flux)
continue

true_N_mas = _require_column("true_N_centroid_mas")
Expand Down Expand Up @@ -945,6 +1087,8 @@ def _optional_column(name: str) -> np.ndarray | None:
true_y_vals,
meas_x,
meas_y,
src1_flux,
src2_flux,
)

if astrometry_expected:
Expand Down
4 changes: 3 additions & 1 deletion smoke_test/runner.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -90,7 +90,9 @@ def _resolve_case_selection(raw_choices: Sequence[str] | None, ci_mode: bool = F
("smoke_std", "gulls_std.x", "smoke_std.prm"),
("smoke_std_binary", "gulls_std.x", "smoke_std_binary.prm"),
("smoke_fish", "gullsFish.x", "smoke_fish.prm"),
("smoke_fish_binary", "gullsFish.x", "smoke_std_binary.prm"),
# For the fish binary CI case we should use the fish binary
# parameter file so outputs land under the fish/ output tree.
("smoke_fish_binary", "gullsFish.x", "smoke_fish_binary.prm"),
("smoke_croin", "gulls_croin.x", "smoke_croin.prm"),
("smoke_croin_binary", "gulls_croin.x", "smoke_croin_binary.prm"),
)
Expand Down
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