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Feature: Add mapping update endpoint #103

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Feature: Add mapping update endpoint #103

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926fe1e
Auto stash before merge of "upstream" and "upstream/master"
syphax-bouazzouni Feb 11, 2022
acbf289
Merge remote-tracking branch 'upstream/master' into upstream
syphax-bouazzouni May 13, 2022
398a80c
Merge remote-tracking branch 'upstream/master' into upstream
syphax-bouazzouni Aug 19, 2022
8770b02
add mapping process update
syphax-bouazzouni Oct 6, 2022
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2 changes: 2 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -68,3 +68,5 @@ test/test_run.log
test/data/ontology_files/catalog-v001.xml

create_permissions.log

ontologies_api.iml
27 changes: 17 additions & 10 deletions controllers/mappings_controller.rb
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Original file line number Diff line number Diff line change
Expand Up @@ -35,6 +35,8 @@ class MappingsController < ApplicationController
reply mappings
end



namespace "/mappings" do
# Display all mappings
get do
Expand Down Expand Up @@ -76,16 +78,7 @@ class MappingsController < ApplicationController

# Display a single mapping - only rest
get '/:mapping' do
mapping_id = nil
if params[:mapping] and params[:mapping].start_with?("http")
mapping_id = params[:mapping]
mapping_id = mapping_id.gsub("/mappings/","/rest_backup_mappings/")
mapping_id = RDF::URI.new(params[:mapping])
else
mapping_id =
"http://data.bioontology.org/rest_backup_mappings/#{mapping_id}"
mapping_id = RDF::URI.new(mapping_id)
end
mapping_id = request_mapping_id
mapping = LinkedData::Mappings.get_rest_mapping(mapping_id)
if mapping
reply populate_mapping_classes([mapping].first)
Expand Down Expand Up @@ -147,6 +140,20 @@ class MappingsController < ApplicationController
reply(201, mapping)
end


patch '/:mapping' do
mapping = LinkedData::Mappings.get_rest_mapping(request_mapping_id)
process = mapping.process
populate_from_params(process, params)
if process.valid?
process.save
else
error 422, process.errors
end
halt 204
end


# Delete a mapping
delete '/:mapping' do
mapping_id = RDF::URI.new(replace_url_prefix(params[:mapping]))
Expand Down
12 changes: 12 additions & 0 deletions helpers/mappings_helper.rb
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Expand Up @@ -33,6 +33,18 @@ def populate_mapping_classes(mappings)

mappings
end

def request_mapping_id
mapping_id = nil
if params[:mapping] and params[:mapping].start_with?("http")
mapping_id = RDF::URI.new(params[:mapping])
else
mapping_id =
"http://data.bioontology.org/rest_backup_mappings/#{params[:mapping]}"
mapping_id = RDF::URI.new(mapping_id)
end
mapping_id
end
end
end
end
Expand Down