MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
Abby SS, Néron B, Ménager H, Touchon M, Rocha EPC (2014). MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems. PLoS ONE 9(10): e110726. doi:10.1371/journal.pone.0110726 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110726
- Uncompress and untar the package:
tar -xzf macsyfinder-x.x.tar.gz- Go to the MacSyFinder directory
cd macsyfinder-x.x- Build
python setup.py build- Test
python setup.py test -vv- Install
sudo python setup.py installTo see all installation options "python setup.py --help"
See the INSTALL file for more details.
The installation from the repository is dedicated to whom want to develop macsyfinder, If you only want to use it, please consider instalation from de distribution.
Please be careful, MacSyView has its own repository: https://github.com/gem-pasteur/macsyview
You will find complete documentation for setting up your project. for the development version on gitlab pages
for public version on readthedocs
The setsid binary in utils directory is used only for functional tests on macosx.
The binary has been build using the setsid-macosx project.