v0.0.5

Add changes:

• CDS fragment process is now optional
• writing of the fasta file outputs (faa and fna) is now optional
• rename of overlapping ORF to nc_ovp_same... (for same strand) and nc_ovp_opp... (for opposite strand)
• addition of execution time visible in info.log output

v0.0.4

Changes:

• addition generation of proteins in aa and nucleic fasta format
• patching fragmentation process of CDS (addition of cds intra frag)
• addition of nucleic fasta format output for all ORFs

v0.0.3

Changes:

- Add some documentation
- Patch opposite strand for element (gives priority to element on the same strand)
- some correction in the README

v0.0.2

Major changes:

split frame sequences into subsequences to avoid memory overload
writes output files on the fly
addition of 4 new optional input parameters:
    types_only: Type feature(s) to use as reference(s) ('CDS' in always included by default).
    types_except: Type feature(s) to not consider as reference(s) (None by default).
    o_include: Type feature(s) and/or Status attribute(s) desired to be written in the output (all by default).
    o_exclude: Type feature(s) and/or Status attribute(s) desired to be excluded (None by default).