Skip to content

Fix for countsplit function in utils.R - #2

Open
unikill066 wants to merge 1 commit into
neurorestore:mainfrom
unikill066:main
Open

Fix for countsplit function in utils.R#2
unikill066 wants to merge 1 commit into
neurorestore:mainfrom
unikill066:main

Conversation

@unikill066

Copy link
Copy Markdown

vespucci_res = run_vespucci(input = input, meta = meta)

run_vespucci runs the following functions in this particular order: countsplit_matrix, calculate_spatial_auc and find_spatial_de

And the error here propagates from the function: countsplit_matrix as mentioned below ...

Splitting matrix
As no overdispersion parameters were provided, Poisson count splitting will be performed. Error in auc@x :
no applicable method for @ applied to an object of class "NULL"

> vespucci_res = run_vespucci(input = input, meta = meta)

run_vespucci runs the following functions in this particular order: countsplit_matrix, calculate_spatial_auc and find_spatial_de

And the error here propagates from the function: `countsplit_matrix` as mentioned below ...

Splitting matrix
As no overdispersion parameters were provided, Poisson count splitting will be performed.
Error in auc@x : 
  no applicable method for `@` applied to an object of class "NULL"
@unikill066

Copy link
Copy Markdown
Author

I attempted to resolve the issue with the countsplit_matrix functionality mentioned in this issue.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant