Prerelease 3.0.0

.nf-core.yml

@@ -9,7 +9,7 @@ lint:
     - assets/nf-core-pixelator_logo_light.png
     - .github/PULL_REQUEST_TEMPLATE.md
   multiqc_config: false
-nf_core_version: 3.5.1
+nf_core_version: 3.5.2
 repository_type: pipeline
 template:
   author: Pixelgen Technologies AB
@@ -23,4 +23,4 @@ template:
     - fastqc
     - multiqc
     - igenomes
-  version: 2.4.0dev
+  version: 3.0.0

CHANGELOG.md

@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## dev - xxxx-xx-xx
+## [[3.0.0](https://github.com/nf-core/pixelator/releases/tag/3.0.0)] - 2025-02-23
 
 ### Changed
 

modules.json

@@ -7,7 +7,7 @@
                 "nf-core": {
                     "cat/fastq": {
                         "branch": "master",
-                        "git_sha": "f4743b089085121497b7c1c81a28810ce2740dde",
+                        "git_sha": "5d28ea7cfaebcfae6f74d1067ea766d8ff19dff3",
                         "installed_by": ["modules"]
                     }
                 }
@@ -26,7 +26,7 @@
                     },
                     "utils_nfschema_plugin": {
                         "branch": "master",
-                        "git_sha": "ff506dcada6fc826ed0c641dc2ed1e98f7345fbe",
+                        "git_sha": "fdc08b8b1ae74f56686ce21f7ea11ad11990ce57",
                         "installed_by": ["subworkflows"]
                     }
                 }

nextflow.config

@@ -262,6 +262,10 @@ profiles {
     test {
         includeConfig 'conf/test_pna.config'
     }
+
+    test_full {
+        includeConfig 'conf/test_full.config'
+    }
 }
 // Load nf-core custom profiles from different institutions
 includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"
@@ -353,7 +357,7 @@ manifest {
     mainScript      = 'main.nf'
     defaultBranch   = 'master'
     nextflowVersion = '!>=25.04.0'
-    version         = '2.4.0dev'
+    version         = '3.0.0'
     doi             = '10.1101/2023.06.05.543770'
 }
 

tests/pna.nf.test.snap

@@ -109,7 +109,7 @@
                     "pixelator": "0.23.0"
                 },
                 "Workflow": {
-                    "nf-core/pixelator": "v2.4.0dev"
+                    "nf-core/pixelator": "v3.0.0"
                 }
             }
         ],
@@ -154,7 +154,7 @@
                     "pixelator": "0.23.0"
                 },
                 "Workflow": {
-                    "nf-core/pixelator": "v2.4.0dev"
+                    "nf-core/pixelator": "v3.0.0"
                 }
             },
             [