Issues

• Add info to stringency and min read number to prtimes file to overrule default

  nhmvienna/AmpliPiper#15 · Filter by author capoony opened on Jun 17, 2026

• Combine multiple primers for the same locus?

  nhmvienna/AmpliPiper#14 · Filter by author capoony opened on Jun 17, 2026
  1

• spacing of labels in distance plot adjust

  nhmvienna/AmpliPiper#13 · Filter by author capoony opened on Jun 17, 2026

• Add taxonomic backbome and allow filterering for certain groups

  nhmvienna/AmpliPiper#12 · Filter by author capoony opened on Jun 17, 2026

• Repeat From certain step

  nhmvienna/AmpliPiper#11 · Filter by author capoony opened on Jun 17, 2026

• gzip demultiplexed FASTQ files

  nhmvienna/AmpliPiper#10 · Filter by author capoony opened on Jun 17, 2026

• spit out TOTAL number of reads specific to locus before selecting top reads

  nhmvienna/AmpliPiper#9 · Filter by author capoony opened on Jun 17, 2026
  1

• remove primers from contigs

  nhmvienna/AmpliPiper#8 · Filter by author mschwentner opened on May 20, 2026

• remove contigs by blast hit

  nhmvienna/AmpliPiper#7 · Filter by author mschwentner opened on May 11, 2026

• option to merge several primer combinations of the same gene

  nhmvienna/AmpliPiper#6 · Filter by author mschwentner opened on May 11, 2026

• option to add primer names to contig name

  nhmvienna/AmpliPiper#5 · Filter by author mschwentner opened on May 11, 2026

• optional frequency of reads

  nhmvienna/AmpliPiper#4 · Filter by author mschwentner opened on May 11, 2026

• amplicon_sorter doesn't find demultiplexed reads

  nhmvienna/AmpliPiper#3 · Filter by author yschoeneberg opened on Apr 29, 2025