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Add precompressed tile support for additional readers and writers

Status: Open.

#4121 In ome/bioformats;

· melissalinkert opened on Dec 4, 2023

Support mixed codecs with precompressed tiles

Status: Open.

#4122 In ome/bioformats;

· melissalinkert opened on Dec 4, 2023

bfconvert: PyramidOMETiffWriter failed to close with no flat and output pattern

Status: Open.

#3907 In ome/bioformats;

· dgault opened on Nov 11, 2022

bug: bfconvert generates bad DICOMs from SVS files

Status: Open.

#4161 In ome/bioformats;

· jcupitt opened on Mar 8, 2024

Add method to add custom DicomJSONProvider

Status: Open.

#4169 In ome/bioformats;

· ebremer opened on Mar 19, 2024

Update IExtraMetadataWriter.setExtraMetadata(...) to accept an Object

Status: Open (in progress).

ome/bioformatsnumber 4243

#4243 In ome/bioformats;

· melissalinkert opened on Sep 25, 2024

Memoizer: ask any ImageReader instances to remove all but the current reader

Status: Open (in progress).

ome/bioformatsnumber 4254

#4254 In ome/bioformats;

· melissalinkert opened on Nov 13, 2024

Removal of compatibility metadata classes for 6.0

Status: Open.

#3287 In ome/bioformats;

· rleigh-codelibre opened on Dec 7, 2018

OBF: Support complex data stacks

Status: Open (in progress).

ome/bioformatsnumber 4362

#4362 In ome/bioformats;

· ngladitz opened on Aug 29, 2025

UpgradeChecker: more thorough check of upgrade check result and HTTP response code

Status: Draft (not ready).

ome/bioformatsnumber 4260

#4260 In ome/bioformats;

· melissalinkert opened on Dec 13, 2024

Review build warnings

Status: Open.

#4407 In ome/bioformats;

· melissalinkert opened on Jan 27, 2026

A check for negativity may be incorrect

Status: Open.

#4393 In ome/bioformats;

· scuniff opened on Dec 27, 2025

Dead store to local variable

Status: Open.

#4235 In ome/bioformats;

· scuniff opened on Sep 9, 2024

NULL being returned for a Boolean object

Status: Open.

#4232 In ome/bioformats;

· scuniff opened on Sep 8, 2024

loci.formats.FormatException while converting series to tiff format

Status: Open.

#4216 In ome/bioformats;

· de9821 opened on Aug 1, 2024

CZI: fluorescent channels not displaying

Status: Open.

#4206 In ome/bioformats;

· dgault opened on Jul 5, 2024

CZI Incorrect Pixel Physical Size (For pyramidal image series)

Status: Open.

#4191 In ome/bioformats;

· ian-coccimiglio opened on May 24, 2024

libturbojpeg.dylib does not pass the macOS notarization check

Status: Open.

#4170 In ome/bioformats;

· conradkun opened on Mar 20, 2024

SVS: Incorrect image colour

Status: Open.

#4166 In ome/bioformats;

· dgault opened on Mar 14, 2024

the return of the Leica SCN reader pink image bug, for SCN files generated by the Leica FL 120 instrument

Status: Open.

#4420 In ome/bioformats;

· reasonatrb opened on Mar 13, 2026

openBytes throwing exception when the preallocated buffer is bigger than enough and 3 or 4 modulo 6

Status: Open.

#4058 In ome/bioformats;

· CGDogan opened on Jul 24, 2023

VSI: not recognizing image pyramid

reader:VSI

Status: Open.

#4015 In ome/bioformats;

· jboulanger opened on Jun 9, 2023

Consider prefixing command line tools with bf-

enhancementNew feature or requestNew feature or request

Status: Open.

#3998 In ome/bioformats;

· melissalinkert opened on May 2, 2023

BDV: Remove absolute file paths

reader:BDV

Status: Open.

#3957 In ome/bioformats;

· dgault opened on Mar 6, 2023

Range [X, X+X) out of bounds for length X

Status: Open.

#3935 In ome/bioformats;

· evhen14 opened on Jan 23, 2023