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Sync datasets with tristan-deep/OpenH-RF - #39

Merged

waltsims merged 164 commits into

open-h:mainfrom

tristan-deep:datasets-sync-2026-09-25

Sep 30, 2026

Merged

Sync datasets with tristan-deep/OpenH-RF#39
waltsims merged 164 commits into
open-h:mainfrom
tristan-deep:datasets-sync-2026-09-25

Commits on May 18, 2026
- Update zea to pre-release
  tristan-deep
  committed
  7e57cfa
- small readme changes
  tristan-deep
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  234013b
Commits on May 19, 2026
- PyPi supported pre-release tag
  tristan-deep
  committed
  e40d144
- Merge remote-tracking branch 'upstream/main'
  tristan-deep
  committed
  27bdd5f
- uv lock
  tristan-deep
  committed
  b490f32
Commits on Jun 8, 2026
- Merge remote-tracking branch 'upstream/main'
  tristan-deep
  committed
  dc8014b
Commits on Jun 19, 2026
- update lens correction verasonics
  tristan-deep
  committed
  51d5b6d
- update outdated module docstrings
  tristan-deep
  committed
  dfb6cae
- remove redundant conversion
  tristan-deep
  committed
  753cd27
Commits on Jun 22, 2026
- bump zea to v0.1.0
  tristan-deep
  committed
  727b161
Commits on Jul 9, 2026
- Merge branch 'main' of https://github.com/tristan-deep/OpenH-RF
  tristan-deep
  committed
  f892543
Commits on Sep 6, 2026
- Merge branch 'main' of https://github.com/tristan-deep/OpenH-RF
  tristan-deep
  committed
  9787979
- Merge remote-tracking branch 'origin/main'
  tristan-deep
  committed
  8996fdf
Commits on Sep 17, 2026
- Add datasets/: reference reconstructions for the published corpus
  
  tristan-deep
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  claude
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  a02a276
- ruff format
  tristan-deep
  committed
  31ab797
- uv run ruff check --fix
  tristan-deep
  committed
  722c4ba
- Pin ruff to 0.16.8 to keep CI and local lint/format in sync
  tristan-deep
  committed
  ad618ad
- Apply ruff format fixes (comment spacing, blank line)
  tristan-deep
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  ffdf5b2
- Merge branch 'add-datasets-folder'
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  b084723
- Ignore generated figures, except a data card's own assets
  
  tristan-deep
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  claude
  committed
  c94958d
- Merge branch 'add-datasets-folder'
  tristan-deep
  committed
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- Module_A_readme_update
  ZongzeLeo
  authored
  232aa22
- Module_C readme update
  ZongzeLeo
  authored
  4aba09e
- Create assets
  ZongzeLeo
  authored
  8da9c26
- Add files via upload
  ZongzeLeo
  authored
  0f0c650
- Delete .gitkeep
  ZongzeLeo
  authored
  94e4756
- Create .gitkeep
  ZongzeLeo
  authored
  6c61940
- Add figure for Module C
  ZongzeLeo
  authored
  2ac80f9
- Delete .gitkeep
  ZongzeLeo
  authored
  a35ce19
- add link to image in asset
  ZongzeLeo
  authored
  559dd2a
- Add example reconstruction image to README
  ZongzeLeo
  authored
  224f237
Commits on Sep 18, 2026
- Restore pre-force-push main history (ancestry only)
  tristan-deep
  committed
  7036227
- Add TU/e cardiac README gallery
  swpenninga
  committed
  a2418c1
- Merge pull request #3 from swpenninga/main
  tristan-deep
  authored
  eaff985
- Simplify module_A reconstruction scripts
  
  tristan-deep
  and
  claude
  committed
  149aff3
- Add B-mode still to tue-carotid assets
  
  tristan-deep
  and
  claude
  committed
  eade151
- Merge pull request #5 from tristan-deep/assets/tue-carotid-main-png
  tristan-deep
  authored
  5c64c4b
- Merge pull request #4 from ZongzeLeo/ubc-readme-update
  tristan-deep
  authored
  7ca3bc9
- Add assets & update readme
  Sidaty1
  committed
  5308cd3
- strasbourg-basel: refresh README, plot the embedded CT
  
  tristan-deep
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  claude
  committed
  bbe2e3c
- Merge pull request #6 from Sidaty1/strasbourg-basel-update
  tristan-deep
  authored
  cb91e80
- update quantitative values in READMEs (checked with data on HF)
  tristan-deep
  committed
  46b459b
- Merge pull request #7 from tristan-deep/readme-numeric-claim-fixes
  tristan-deep
  authored
  5c1d9ed
- Adapt the OpenH-RF Resolve submission for GH/HF split
  mxncr
  committed
  9554aa5
- Update README with dataset naming convention
  ycpan1597
  authored
  eed37a6
- added assets folder and main.png to datasets/vanderbilt
  Preston Pan
  committed
  28c222f
Commits on Sep 19, 2026
- kaist-snubh-barreleye: add main image asset, update README, default frame S01_D1
  
  Seokhwan-Oh
  and
  claude
  committed
  aeaa504
- Add NV-Raw2Insights-US animation and collage image
  waltsims
  committed
  c04e395
- Update readme Vanderbilt
  tristan-deep
  committed
  5cf78f8
- Merge pull request #9 from ycpan1597/patch-1
  tristan-deep
  authored
  d0955d7
- Merge pull request #10 from ycpan1597/add-assets-folder
  tristan-deep
  authored
  1d5c7f0
- technion: add assets/ with one main image per dataset
  sankethvedula
  committed
  4be1a5d
- vanderbilt: drop redundant static image from README
  
  tristan-deep
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  claude
  committed
  c4caa5d
- Merge pull request #14 from tristan-deep/vanderbilt-readme-gif-cleanup
  tristan-deep
  authored
  af6ae27
- Merge pull request #13 from sankethvedula/technion-assets
  tristan-deep
  authored
  a33aec2
- technion: add zea process commands, bladder cine gif
  
  tristan-deep
  and
  claude
  committed
  53987fa
- Merge pull request #15 from tristan-deep/technion-zea-process-commands
  tristan-deep
  authored
  3f40b64
- Merge pull request #12 from open-h/nv-raw2insights-hero-assets
  tristan-deep
  authored
  8279609
- add high res image nvidia
  
  tristan-deep
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  claude
  committed
  08a5eef
- kaist-snubh-barreleye: fix dynamic range bug, simplify reconstruct.py, add zea process command
  
  tristan-deep
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  claude
  committed
  0c021dd
- Merge pull request #11 from Seokhwan-Oh/kaist-snubh-barreleye-assets
  tristan-deep
  authored
  be668a3
Commits on Sep 20, 2026
- Merge pull request #16 from tristan-deep/nv-raw2insights-hero-main-image
  tristan-deep
  authored
  509fc2b
Commits on Sep 21, 2026
- bladder frame update
  tristan-deep
  committed
  539cd07
- nv-raw2insights-us: select the main.png frame and fix pipeline.yaml
  
  tristan-deep
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  claude
  committed
  7b4116b
- Merge pull request #18 from tristan-deep/nv-raw2insights-us-frame-and-pipeline
  tristan-deep
  authored
  089d312
- Merge pull request #19 from tristan-deep/technion/update-bladder-frame
  tristan-deep
  authored
  8d226f6
- unc-openpros: restructure reconstruct.py, prettier SOS colormap, add hero image
  
  tristan-deep
  and
  claude
  committed
  b9560fa
- unc-openpros: load pipeline.yaml straight from the Hub
  
  tristan-deep
  and
  claude
  committed
  35705f4
- Merge pull request #20 from tristan-deep/unc-openpros-reconstruct-cleanup
  tristan-deep
  authored
  b490d2f
- update tum submission
  Felixduelmer
  committed
  46ed8de
- Merge remote-tracking branch 'upstream/main' into feat/update-tum-submission
  Felixduelmer
  committed
  6775692
- Some minor fixes:
  tristan-deep
  committed
  0547df3
- address comments and add specific hero image
  Felixduelmer
  committed
  75ada54
- Merge pull request #21 from Felixduelmer/feat/update-tum-submission
  tristan-deep
  authored
  4f617f9
- Fix README links that break on the Hugging Face Hub
  
  tristan-deep
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  claude
  committed
  447abd3
- Merge pull request #22 from tristan-deep/readme-hf-link-fixes
  tristan-deep
  authored
  e800811
- Merge pull request #8 from mxncr/resolve-fix-openhrf
  tristan-deep
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  5ddf821
- tue-cardiac: write the reference render into assets/
  
  tristan-deep
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  claude
  committed
  dec70b9
- Merge pull request #23 from tristan-deep/tue-cardiac-output-to-assets
  tristan-deep
  authored
  32f9725
- Update Colorado Boulder README
  ansa6319
  authored
  36c0eb5
- Add files via upload
  ansa6319
  authored
  3766912
- unc-openpros: drop references to the unshipped convert.py
  
  tristan-deep
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  claude
  committed
  1f2c105
- unc-openpros: add the card frontmatter and the hero image
  
  tristan-deep
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  claude
  committed
  2ec2a4a
Commits on Sep 22, 2026
- Merge pull request #25 from tristan-deep/unc-openpros-drop-convert-py
  tristan-deep
  authored
  53c38e3
- colorado-boulder: lead the card with tracked SSA sweep loops
  
  tristan-deep
  and
  claude
  committed
  40b9f8e
- remove hardcoded cpu device
  tristan-deep
  committed
  59e23e1
- clean up reconstruct.py
  tristan-deep
  committed
  72f34d0
- vanderbilt, tumunich: record the published pipeline.yaml path
  
  tristan-deep
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  claude
  committed
  dab91a4
- Merge pull request #26 from tristan-deep/handled-pipeline-hf-constants
  tristan-deep
  authored
  d802fa7
- datasets: clean up reconstruct.py across the corpus
  
  tristan-deep
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  claude
  committed
  6b0a5cc
- save to assets folder
  tristan-deep
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  6b0ef28
- assets to this file too
  tristan-deep
  committed
  c071514
- tue-aaa updates
  tristan-deep
  committed
  4a5330c
- politorino update gif
  tristan-deep
  committed
  17e4b4c
- update siemens healthineers gif
  tristan-deep
  committed
  fcc9af7
- tue-aaa assets update
  tristan-deep
  committed
  90e72fc
- add twente cavitation assets
  tristan-deep
  committed
  b9bd5ca
- twente-vortexflow and waterloo-muscle updates
  tristan-deep
  committed
  ad50357
- tel-aviv add assets
  tristan-deep
  committed
  e3557ce
- Merge pull request #24 from ansa6319/patch-1
  tristan-deep
  authored
  1d0e087
- more broken link fixes
  tristan-deep
  committed
  5ce1888
- Merge branch 'main' of github.com:tristan-deep/OpenH-RF into reconstruct-cleanup
  tristan-deep
  committed
  ebfa6db
- mosaic intelligence improved
  tristan-deep
  committed
  62fe32d
- link fix
  tristan-deep
  committed
  baa70d5
- adding main / hero images to concordia, dartmouth-uct and us4us
  tristan-deep
  committed
  c666efa
- siemens datacard update (hero + main images)
  tristan-deep
  committed
  9862160
- nv-raw2insights-us: keep the pipeline.yaml header comment
  
  tristan-deep
  and
  claude
  committed
  0d24a84
Commits on Sep 23, 2026
- wpi: fix reconstruct.py default, README inconsistencies, add hero assets
  RyoMurakami-MedRobo
  committed
  34e9fd0
- datasets: restructure every data card to the common README layout
  
  tristan-deep
  and
  claude
  committed
  ee8de89
- Merge pull request #27 from RyoMurakami-MedRobo/wpi-final-submission
  tristan-deep
  authored
  dc6c327
- Merge remote-tracking branch 'origin/main' into update-readme-structure
  tristan-deep
  committed
  6f3a01c
- WPI reorder sections
  tristan-deep
  committed
  be48da1
- datasets: unwrap hard line breaks in every data card
  
  tristan-deep
  and
  claude
  committed
  0289a18
- Merge pull request #28 from tristan-deep/update-readme-structure
  tristan-deep
  authored
  110ef2b
- weizmann-sampl: add assets/main.png
  
  tristan-deep
  and
  claude
  committed
  0ec64e2
- Change SOS_RANGE in reconstcution, update main figure, add comparison figure and update README
  PengJin95
  committed
  16eec1d
Commits on Sep 24, 2026
- waterloo-carotid, waterloo-largeartery: refresh hero assets and data cards
  Hassan Nahas
  committed
  d6e8f7c
- tue-cardiac: add author middle initials to the citation
  
  tristan-deep
  and
  claude
  committed
  b6e9bdc
- Merge pull request #29 from PengJin95/unc_openpros_doublecheck
  tristan-deep
  authored
  a5cae85
- Merge pull request #31 from tristan-deep/tue-cardiac-author-initials
  tristan-deep
  authored
  5e2ca30
- unc-openpros: point the caption link at the sample it names
  
  tristan-deep
  and
  claude
  committed
  9e40f1b
- Merge pull request #32 from tristan-deep/unc-openpros-caption-link
  tristan-deep
  authored
  1dc6909
- oslo: add hero and main images for the collection and each sub-dataset
  tristan-deep
  committed
  8040648
- oslo: add a zea process pipeline.yaml per sub-dataset
  tristan-deep
  committed
  b60c4ac
- unc-liver: add the split CSV, center the hero image
  tristan-deep
  committed
  1cf0032
- add:twente cavitation update
  HermendR
  committed
  bf6d72c
- fix: correctly located files
  HermendR
  committed
  a4ac5e3
- Merge pull request #34 from tristan-deep/oslo-hero-main
  tristan-deep
  authored
  c4dbc1b
- Merge pull request #35 from tristan-deep/unc-liver-card-fixes
  tristan-deep
  authored
  4988009
- Update twente-microbubblesim
  AnassH17
  committed
  e66a957
- waterloo-largeartery: rename to waterloo-femoralvein
  tristan-deep
  committed
  9d1a26e
- Merge branch 'main' into twente-cavitation-update
  HermendR
  authored
  915419f
- Merge remote-tracking branch 'origin/main' into waterloo-datacard-updates
  tristan-deep
  committed
  ed6f51b
- Clarify Twente vortexflow dataset metadata
  rienkcz
  committed
  523457c
- Import hdf5plugin; update reference images
  
  rienkcz
  and
  Copilot
  committed
  2aa1d98
- fixed default settings for reconstruct.py
  Hassan Nahas
  committed
  5029434
- twente-microbubblesim: standardize reconstruct.py, fold away utils.py
  tristan-deep
  committed
  f330ef2
- fix pipeline yaml for femvein as well
  Hassan Nahas
  committed
  964cffc
- twente-cavitation: fix reconstruct.py, card links and captions
  tristan-deep
  committed
  34a405d
- Merge pull request #36 from HermendR/twente-cavitation-update
  tristan-deep
  authored
  40abf99
- update image
  tristan-deep
  committed
  10ee008
- Merge pull request #30 from hnuw/waterloo-datacard-updates
  tristan-deep
  authored
  0941a2c
- waterloo-femoralvein: point Hub paths at waterloo-femoralvein
  tristan-deep
  committed
  4d60672
- Merge pull request #39 from tristan-deep/waterloo-femoralvein-hub-paths
  tristan-deep
  authored
  ab380c5
- Fix Twente vortexflow RF channel count
  rienkcz
  committed
  fb4a674
- twente-vortexflow: simplify reconstruct.py, grid and dynamic range in YAML
  tristan-deep
  committed
  cf1ecfe
- twente-vortexflow: build the pipeline in code again
  tristan-deep
  committed
  d427864
- weizmann-sampl: list individual contributors
  tristan-deep
  committed
  80c0ad4
- Merge pull request #40 from tristan-deep/weizmann-sampl-contributors
  tristan-deep
  authored
  92324db
- Add license conversion note in README
  PengJin95
  committed
  cce46af
Commits on Sep 25, 2026
Commits on Sep 29, 2026
- concordia: sync with tristan-deep/OpenH-RF (#46)
  tristan-deep
  committed
  38c5588
- weillcornell: sync with tristan-deep/OpenH-RF (#33, #47)
  tristan-deep
  committed
  5e3a5b6
- stanford-murine: sync with tristan-deep/OpenH-RF (#48)
  tristan-deep
  committed
  c65073f
- resolvestroke: sync with tristan-deep/OpenH-RF (#49)
  tristan-deep
  committed
  4742235

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