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UBERONParcellation removal #312

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UBERONParcellation removal #312

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b529d4a
UBERONParcellation removal
Raphael-Gazzotti Mar 5, 2026
26cb5e3
Rename property relatedAnatomicalEntity to anatomicalEntity
Raphael-Gazzotti Mar 5, 2026
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20 changes: 12 additions & 8 deletions schemas/atlas/parcellationEntity.schema.tpl.json
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Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,18 @@
"items": {
"type": "string"
}
},
},
"anatomicalEntity":{
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@lzehl lzehl Mar 6, 2026

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Suggested change
"anatomicalEntity":{
"crossSpeciesAnatomicalEntity":{

"_instruction": "Add the related anatomical entity.",
"_linkedTypes": [
"controlledTerms:MuscularStructure",
"controlledTerms:NervousSystemStructure",
"controlledTerms:Organ",
"controlledTerms:SkeletalStructure",
"controlledTerms:TissueStructure",
"controlledTerms:VascularStructure"
]
},
"definition": {
"type": "string",
"_instruction": "Enter the definition for this parcellation entity."
Expand Down Expand Up @@ -54,13 +65,6 @@
"iri"
]
}
},
"relatedUBERONTerm":{
"_instruction": "Add the related anatomical entity as defined by the UBERON ontology.",
"_linkedTypes": [
"controlledTerms:Organ",
"controlledTerms:UBERONParcellation"
]
}
}
}
18 changes: 11 additions & 7 deletions schemas/non-atlas/customAnatomicalEntity.schema.tpl.json
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,17 @@
"name"
],
"properties": {
"anatomicalEntity":{
"_instruction": "Add the related anatomical entity.",
"_linkedTypes": [
"controlledTerms:MuscularStructure",
"controlledTerms:NervousSystemStructure",
"controlledTerms:Organ",
"controlledTerms:SkeletalStructure",
"controlledTerms:TissueStructure",
"controlledTerms:VascularStructure"
]
},
"hasAnnotation": {
"type": "array",
"minItems": 1,
Expand All @@ -20,13 +31,6 @@
"name": {
"type": "string",
"_instruction": "Enter a descriptive name for this custom anatomical entity."
},
"relatedUBERONTerm":{
"_instruction": "Add the related anatomical entity as defined by the UBERON ontology.",
"_linkedTypes": [
"controlledTerms:Organ",
"controlledTerms:UBERONParcellation"
]
},
"relationAssessment": {
"type": "array",
Expand Down
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