Merged
Conversation
Switch to weekly dependency updates
…d-content-guidance Add 'Contributorship and content guidance' content
Update out-of-date references to job-runner, release-hatch etc and replace with RAP Agent, Controller and Airlock. Note that this page still provides just a basic overview of the components of the system and doesn't attempt to provide detailed instructions on how to actually run all the things.
Update the systems integrators page
Bumps the production-dependencies group with 26 updates: | Package | From | To | | --- | --- | --- | | [babel](https://github.com/python-babel/babel) | `2.17.0` | `2.18.0` | | [backrefs](https://github.com/facelessuser/backrefs) | `5.8` | `6.2` | | [certifi](https://github.com/certifi/python-certifi) | `2025.1.31` | `2026.2.25` | | [charset-normalizer](https://github.com/jawah/charset_normalizer) | `3.4.1` | `3.4.4` | | [idna](https://github.com/kjd/idna) | `3.10` | `3.11` | | [markdown](https://github.com/Python-Markdown/markdown) | `3.8.1` | `3.10.2` | | [markupsafe](https://github.com/pallets/markupsafe) | `3.0.2` | `3.0.3` | | [mkdocs-material](https://github.com/squidfunk/mkdocs-material) | `9.7.3` | `9.7.4` | | [mypy-extensions](https://github.com/python/mypy_extensions) | `1.0.0` | `1.1.0` | | [pathspec](https://github.com/cpburnz/python-pathspec) | `0.12.1` | `1.0.4` | | [pygments](https://github.com/pygments/pygments) | `2.19.1` | `2.19.2` | | [pymdown-extensions](https://github.com/facelessuser/pymdown-extensions) | `10.16.1` | `10.21` | | [pyyaml-env-tag](https://github.com/waylan/pyyaml-env-tag) | `0.1` | `1.1` | | [requests](https://github.com/psf/requests) | `2.32.4` | `2.32.5` | | [termcolor](https://github.com/termcolor/termcolor) | `2.5.0` | `3.3.0` | | [typing-extensions](https://github.com/python/typing_extensions) | `4.12.2` | `4.15.0` | | [build](https://github.com/pypa/build) | `1.2.2.post1` | `1.4.0` | | [cfgv](https://github.com/asottile/cfgv) | `3.4.0` | `3.5.0` | | [distlib](https://github.com/pypa/distlib) | `0.3.9` | `0.4.0` | | [filelock](https://github.com/tox-dev/py-filelock) | `3.20.3` | `3.25.0` | | [identify](https://github.com/pre-commit/identify) | `2.6.8` | `2.6.17` | | [nodeenv](https://github.com/ekalinin/nodeenv) | `1.9.1` | `1.10.0` | | [virtualenv](https://github.com/pypa/virtualenv) | `20.36.1` | `21.1.0` | | [wheel](https://github.com/pypa/wheel) | `0.46.2` | `0.46.3` | | [pip](https://github.com/pypa/pip) | `26.0` | `26.0.1` | | [setuptools](https://github.com/pypa/setuptools) | `78.1.1` | `82.0.0` | Updates `babel` from 2.17.0 to 2.18.0 - [Release notes](https://github.com/python-babel/babel/releases) - [Changelog](https://github.com/python-babel/babel/blob/master/CHANGES.rst) - [Commits](python-babel/babel@v2.17.0...v2.18.0) Updates `backrefs` from 5.8 to 6.2 - [Release notes](https://github.com/facelessuser/backrefs/releases) - [Commits](facelessuser/backrefs@5.8...6.2) Updates `certifi` from 2025.1.31 to 2026.2.25 - [Commits](certifi/python-certifi@2025.01.31...2026.02.25) Updates `charset-normalizer` from 3.4.1 to 3.4.4 - [Release notes](https://github.com/jawah/charset_normalizer/releases) - [Changelog](https://github.com/jawah/charset_normalizer/blob/master/CHANGELOG.md) - [Commits](jawah/charset_normalizer@3.4.1...3.4.4) Updates `idna` from 3.10 to 3.11 - [Release notes](https://github.com/kjd/idna/releases) - [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.rst) - [Commits](kjd/idna@v3.10...v3.11) Updates `markdown` from 3.8.1 to 3.10.2 - [Release notes](https://github.com/Python-Markdown/markdown/releases) - [Changelog](https://github.com/Python-Markdown/markdown/blob/master/docs/changelog.md) - [Commits](Python-Markdown/markdown@3.8.1...3.10.2) Updates `markupsafe` from 3.0.2 to 3.0.3 - [Release notes](https://github.com/pallets/markupsafe/releases) - [Changelog](https://github.com/pallets/markupsafe/blob/main/CHANGES.rst) - [Commits](pallets/markupsafe@3.0.2...3.0.3) Updates `mkdocs-material` from 9.7.3 to 9.7.4 - [Release notes](https://github.com/squidfunk/mkdocs-material/releases) - [Changelog](https://github.com/squidfunk/mkdocs-material/blob/master/CHANGELOG) - [Commits](squidfunk/mkdocs-material@9.7.3...9.7.4) Updates `mypy-extensions` from 1.0.0 to 1.1.0 - [Commits](python/mypy_extensions@1.0.0...1.1.0) Updates `pathspec` from 0.12.1 to 1.0.4 - [Release notes](https://github.com/cpburnz/python-pathspec/releases) - [Changelog](https://github.com/cpburnz/python-pathspec/blob/master/CHANGES.rst) - [Commits](cpburnz/python-pathspec@v0.12.1...v1.0.4) Updates `pygments` from 2.19.1 to 2.19.2 - [Release notes](https://github.com/pygments/pygments/releases) - [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES) - [Commits](pygments/pygments@2.19.1...2.19.2) Updates `pymdown-extensions` from 10.16.1 to 10.21 - [Release notes](https://github.com/facelessuser/pymdown-extensions/releases) - [Commits](facelessuser/pymdown-extensions@10.16.1...10.21) Updates `pyyaml-env-tag` from 0.1 to 1.1 - [Commits](waylan/pyyaml-env-tag@0.1...1.1) Updates `requests` from 2.32.4 to 2.32.5 - [Release notes](https://github.com/psf/requests/releases) - [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md) - [Commits](psf/requests@v2.32.4...v2.32.5) Updates `termcolor` from 2.5.0 to 3.3.0 - [Release notes](https://github.com/termcolor/termcolor/releases) - [Changelog](https://github.com/termcolor/termcolor/blob/main/CHANGES.md) - [Commits](termcolor/termcolor@2.5.0...3.3.0) Updates `typing-extensions` from 4.12.2 to 4.15.0 - [Release notes](https://github.com/python/typing_extensions/releases) - [Changelog](https://github.com/python/typing_extensions/blob/main/CHANGELOG.md) - [Commits](python/typing_extensions@4.12.2...4.15.0) Updates `build` from 1.2.2.post1 to 1.4.0 - [Release notes](https://github.com/pypa/build/releases) - [Changelog](https://github.com/pypa/build/blob/main/CHANGELOG.rst) - [Commits](pypa/build@1.2.2.post1...1.4.0) Updates `cfgv` from 3.4.0 to 3.5.0 - [Commits](asottile/cfgv@v3.4.0...v3.5.0) Updates `distlib` from 0.3.9 to 0.4.0 - [Release notes](https://github.com/pypa/distlib/releases) - [Changelog](https://github.com/pypa/distlib/blob/master/CHANGES.rst) - [Commits](pypa/distlib@0.3.9...0.4.0) Updates `filelock` from 3.20.3 to 3.25.0 - [Release notes](https://github.com/tox-dev/py-filelock/releases) - [Changelog](https://github.com/tox-dev/filelock/blob/main/docs/changelog.rst) - [Commits](tox-dev/filelock@3.20.3...3.25.0) Updates `identify` from 2.6.8 to 2.6.17 - [Commits](pre-commit/identify@v2.6.8...v2.6.17) Updates `nodeenv` from 1.9.1 to 1.10.0 - [Release notes](https://github.com/ekalinin/nodeenv/releases) - [Changelog](https://github.com/ekalinin/nodeenv/blob/master/CHANGES) - [Commits](ekalinin/nodeenv@1.9.1...1.10.0) Updates `virtualenv` from 20.36.1 to 21.1.0 - [Release notes](https://github.com/pypa/virtualenv/releases) - [Changelog](https://github.com/pypa/virtualenv/blob/main/docs/changelog.rst) - [Commits](pypa/virtualenv@20.36.1...21.1.0) Updates `wheel` from 0.46.2 to 0.46.3 - [Release notes](https://github.com/pypa/wheel/releases) - [Changelog](https://github.com/pypa/wheel/blob/main/docs/news.rst) - [Commits](pypa/wheel@0.46.2...0.46.3) Updates `pip` from 26.0 to 26.0.1 - [Changelog](https://github.com/pypa/pip/blob/main/NEWS.rst) - [Commits](pypa/pip@26.0...26.0.1) Updates `setuptools` from 78.1.1 to 82.0.0 - [Release notes](https://github.com/pypa/setuptools/releases) - [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst) - [Commits](pypa/setuptools@v78.1.1...v82.0.0) --- updated-dependencies: - dependency-name: babel dependency-version: 2.18.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: backrefs dependency-version: '6.2' dependency-type: indirect update-type: version-update:semver-major dependency-group: production-dependencies - dependency-name: certifi dependency-version: 2026.2.25 dependency-type: indirect update-type: version-update:semver-major dependency-group: production-dependencies - dependency-name: charset-normalizer dependency-version: 3.4.4 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: idna dependency-version: '3.11' dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: markdown dependency-version: 3.10.2 dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: markupsafe dependency-version: 3.0.3 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: mkdocs-material dependency-version: 9.7.4 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: mypy-extensions dependency-version: 1.1.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: pathspec dependency-version: 1.0.4 dependency-type: indirect update-type: version-update:semver-major dependency-group: production-dependencies - dependency-name: pygments dependency-version: 2.19.2 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: pymdown-extensions dependency-version: '10.21' dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: pyyaml-env-tag dependency-version: '1.1' dependency-type: indirect update-type: version-update:semver-major dependency-group: production-dependencies - dependency-name: requests dependency-version: 2.32.5 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: termcolor dependency-version: 3.3.0 dependency-type: indirect update-type: version-update:semver-major dependency-group: production-dependencies - dependency-name: typing-extensions dependency-version: 4.15.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: build dependency-version: 1.4.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: cfgv dependency-version: 3.5.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: distlib dependency-version: 0.4.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: filelock dependency-version: 3.25.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: identify dependency-version: 2.6.17 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: nodeenv dependency-version: 1.10.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: virtualenv dependency-version: 21.1.0 dependency-type: indirect update-type: version-update:semver-major dependency-group: production-dependencies - dependency-name: wheel dependency-version: 0.46.3 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: pip dependency-version: 26.0.1 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: setuptools dependency-version: 82.0.0 dependency-type: indirect update-type: version-update:semver-major dependency-group: production-dependencies ... Signed-off-by: dependabot[bot] <support@github.com>
…pendencies-c4a58b02fb Bump the production-dependencies group with 26 updates
Update project.yaml version in examples
This is from Material for MkDocs, warning that it will not support MkDocs 2. Material for MkDocs has pinned to `mkdocs<2` so we don't need to do anything further here.
Remove MkDocs 2 warning
Bumps the development-dependencies group with 1 update: [ruff](https://github.com/astral-sh/ruff). Updates `ruff` from 0.15.4 to 0.15.5 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.15.4...0.15.5) --- updated-dependencies: - dependency-name: ruff dependency-version: 0.15.5 dependency-type: direct:development update-type: version-update:semver-patch dependency-group: development-dependencies ... Signed-off-by: dependabot[bot] <support@github.com>
…ependencies-ced9a5a57e Bump ruff from 0.15.4 to 0.15.5 in the development-dependencies group
Bumps the production-dependencies group with 7 updates: | Package | From | To | | --- | --- | --- | | [charset-normalizer](https://github.com/jawah/charset_normalizer) | `3.4.5` | `3.4.6` | | [mkdocs-get-deps](https://github.com/mkdocs/get-deps) | `0.2.0` | `0.2.2` | | [mkdocs-material](https://github.com/squidfunk/mkdocs-material) | `9.7.4` | `9.7.5` | | [filelock](https://github.com/tox-dev/py-filelock) | `3.25.0` | `3.25.2` | | [identify](https://github.com/pre-commit/identify) | `2.6.17` | `2.6.18` | | [virtualenv](https://github.com/pypa/virtualenv) | `21.1.0` | `21.2.0` | | [setuptools](https://github.com/pypa/setuptools) | `82.0.0` | `82.0.1` | Updates `charset-normalizer` from 3.4.5 to 3.4.6 - [Release notes](https://github.com/jawah/charset_normalizer/releases) - [Changelog](https://github.com/jawah/charset_normalizer/blob/master/CHANGELOG.md) - [Commits](jawah/charset_normalizer@3.4.5...3.4.6) Updates `mkdocs-get-deps` from 0.2.0 to 0.2.2 - [Commits](https://github.com/mkdocs/get-deps/commits) Updates `mkdocs-material` from 9.7.4 to 9.7.5 - [Release notes](https://github.com/squidfunk/mkdocs-material/releases) - [Changelog](https://github.com/squidfunk/mkdocs-material/blob/master/CHANGELOG) - [Commits](squidfunk/mkdocs-material@9.7.4...9.7.5) Updates `filelock` from 3.25.0 to 3.25.2 - [Release notes](https://github.com/tox-dev/py-filelock/releases) - [Changelog](https://github.com/tox-dev/filelock/blob/main/docs/changelog.rst) - [Commits](tox-dev/filelock@3.25.0...3.25.2) Updates `identify` from 2.6.17 to 2.6.18 - [Commits](pre-commit/identify@v2.6.17...v2.6.18) Updates `virtualenv` from 21.1.0 to 21.2.0 - [Release notes](https://github.com/pypa/virtualenv/releases) - [Changelog](https://github.com/pypa/virtualenv/blob/main/docs/changelog.rst) - [Commits](pypa/virtualenv@21.1.0...21.2.0) Updates `setuptools` from 82.0.0 to 82.0.1 - [Release notes](https://github.com/pypa/setuptools/releases) - [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst) - [Commits](pypa/setuptools@v82.0.0...v82.0.1) --- updated-dependencies: - dependency-name: charset-normalizer dependency-version: 3.4.6 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: mkdocs-get-deps dependency-version: 0.2.2 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: mkdocs-material dependency-version: 9.7.5 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: filelock dependency-version: 3.25.2 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: identify dependency-version: 2.6.18 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies - dependency-name: virtualenv dependency-version: 21.2.0 dependency-type: indirect update-type: version-update:semver-minor dependency-group: production-dependencies - dependency-name: setuptools dependency-version: 82.0.1 dependency-type: indirect update-type: version-update:semver-patch dependency-group: production-dependencies ... Signed-off-by: dependabot[bot] <support@github.com>
…pendencies-c1635a06af Bump the production-dependencies group with 7 updates
…t that statuses are no longer publicly visible
…fixes Update the 'Edit Project status' section of job-server docs to reflect that statuses are no longer publicly visible
Later versions break the file watcher for the MkDocs server. See mkdocs/mkdocs#4032.
…eload Pin `click` to v8.2.1
Reporting a data breach text updated.
The Clinical DATAPAST Function page updated
Removed 'should' and replaced with 'must' in the Reporting a data breach section.
These are moving to the team manual.
We're moving the documentation on reports to the team manual.
…tation Remove reports documentation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.