fix: remove deprecated Project Score fetch tasks#201
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Project Score (cog.sanger.ac.uk/cmp/download/{gene_identifiers_latest.csv.gz,
essentiality_matrices.zip}) has been deprecated upstream. The pts
target step no longer consumes these inputs, so stop fetching them.
Refs opentargets/issues#4367
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Mirror the pis and pts cleanup: drop the Sanger Project Score fetch tasks from pis.yaml and the matching pre-processing + source entries from pts.yaml. The deprecated resource (cog.sanger.ac.uk/cmp/download/ gene_identifiers_latest.csv.gz + essentiality_matrices.zip) is no longer consumed by the pts target step. The Sanger Cell Model Passport download (model_list_latest.csv.gz, used by the Project Score v2 CRISPR evidence parser) is untouched. Companion PRs: - pts: opentargets/pts#138 - pis: opentargets/pis#201 Refs opentargets/issues#4367
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Summary
Project Score has been deprecated upstream. Stop fetching the two files that fed the (now removed) target dbXrefs pipeline in pts:
https://cog.sanger.ac.uk/cmp/download/gene_identifiers_latest.csv.gzhttps://cog.sanger.ac.uk/cmp/download/essentiality_matrices.zipThe Sanger Cell Model Passport download (
model_list_latest.csv.gz, used by the surviving Project Score v2 CRISPR evidence parser) is untouched.Companion PRs:
_build_project_scoresand the matching source entries)project-scores/from the validate fixture)Refs opentargets/issues#4367