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    9 repositories

    • tsne

      Public
      A python wrapper for Barnes-Hut tsne
      Python
      •
      Other
      •130•0•0•2•Updated Sep 18, 2025Sep 18, 2025

    • pyotf

      Public
      python functions for simulating optical transfer functions
      Python
      •
      Apache License 2.0
      •19•0•0•0•Updated Mar 28, 2023Mar 28, 2023

    • dphtools

      Public
      Tools for optics and image analysis
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 17, 2022Oct 17, 2022

    • peaks

      Public
      A package of utilities for finding, fitting and analyzing punctate image data.
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Sep 9, 2022Sep 9, 2022

    • awesome-single-cell

      Public
      List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
      MIT License
      •1.1k•3•0•0•Updated Apr 12, 2022Apr 12, 2022

    • fbpca

      Public archive
      Fast Randomized PCA/SVD
      Python
      •
      Other
      •92•0•0•0•Updated Jan 30, 2020Jan 30, 2020

    • umap

      Public
      Uniform Manifold Approximation and Projection
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •881•0•0•0•Updated Jun 10, 2019Jun 10, 2019

    • scrublet

      Public
      Detect doublets in single-cell RNA-seq data
      Jupyter Notebook
      •
      MIT License
      •80•0•0•0•Updated Oct 5, 2018Oct 5, 2018

    • vcflib

      Public
      a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
      C++
      •
      MIT License
      •223•0•0•0•Updated Jun 6, 2017Jun 6, 2017
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