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@CBBIO computational Biology and Bioinformatics

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    10 repositories

    • FANTASIA-Lite

      Public
      Fantasia Lite bundles the essentials for running GO annotation transfer on local FASTA files without the full FANTASIA infrastructure. The lightweight Python pi…
      Pep8
      •
      GNU Affero General Public License v3.0
      •4•1•2•0•Updated Apr 26, 2026Apr 26, 2026

    • FANTASIA

      Public
      Functional ANnoTAtion based on embedding space SImilArity
      Python
      •
      GNU Affero General Public License v3.0
      •4•14•10•1•Updated Apr 20, 2026Apr 20, 2026

    • protein-information-system

      Public
      Functional sequence annotation, metamorphism and multifunctionality research over proteins
      bioinformaticsproteinsstructural-biology
      bioinformaticsproteinsstructural-biologypdbembeddingsproteinproteomicsuniprotesmproteomics-data-integration
      Python
      •1•7•0•0•Updated Feb 10, 2026Feb 10, 2026

    • metamorphic_multifunction_search

      Public
      Identification and analysis of protein structures that exhibit both structural metamorphism and functional multifunctionality
      Python
      •1•0•0•0•Updated Jan 13, 2026Jan 13, 2026

    • FANTASIA-cafa-eval

      Public
      Evaluation tools for FANTASIA experiments using CAFA metrics (precision, recall, F-max, coverage), based on CAFA-evaluator.
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • ancestral_states_proteins

      Public
      Python
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • func-lm

      Public
      Data from paper
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated May 23, 2024May 23, 2024

    • .github

      Public
      0•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • Compute_IC

      Public
      Compute Information Content from a list of GO IDs
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 7, 2023Aug 7, 2023

    • GRPROJECT2021

      Public
      0•0•0•0•Updated Nov 2, 2022Nov 2, 2022
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