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8 repositories

GenomicsDB
Public
High performance data storage for importing, querying and transforming variants.
java bioinformatics scala
java bioinformatics scala spark genomics cpp mpi gatk variant-calling variant
C++
•
Other
•17•99•27•7•Updated May 15, 2025May 15, 2025
GenomicsDB-Python
Public
Python Bindings to the native GenomicsDB library
python genomicsdb
python genomicsdb
Python
•
MIT License
•0•1•1•0•Updated Mar 23, 2025Mar 23, 2025
TestGenomicsDBJar
Public
Test GenomicsDB jar from Maven central with GitHub Actions
Shell
•0•1•0•0•Updated Jan 31, 2025Jan 31, 2025
GenomicsDB-Go
Public
Experimental golang bindings to GenomicsDB
Go
•
MIT License
•0•0•0•0•Updated Nov 27, 2023Nov 27, 2023
GenomicsDB-R
Public
Experimental R bindings to the native GenomicsDB library
r genomics genomics-data
r genomics genomics-data genomicsdb
R
•
GNU General Public License v2.0
•2•5•2•0•Updated Nov 20, 2023Nov 20, 2023
htslib
Public
C library for high-throughput sequencing data formats
C
•
Other
•461•1•0•2•Updated Sep 25, 2023Sep 25, 2023
GKL
Public
Accelerated kernel library for genomics
C
•
MIT License
•41•1•0•0•Updated Nov 8, 2018Nov 8, 2018
GenomicsSampleAPIs
Public
Python
•
MIT License
•1•1•0•0•Updated Jun 22, 2017Jun 22, 2017

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