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    17 repositories

    • SpatialViewer

      Public
      An R package providing an interactive Shiny application for exploring spatial transcriptomics data stored in Seurat objects.
      R
      •
      MIT License
      •0•0•0•0•Updated May 21, 2026May 21, 2026

    • cosmx_analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • PanelSeqMelanomaNotebook

      Public
      Detailed Description of the Pipeline From FASTQ to ClinCNV calling
      Python
      •0•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • MCGN-for-PDA

      Public
      Code for single-cell analysis in Raufi et al
      Jupyter Notebook
      •0•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • PDAC_tropism

      Public
      This preclinical study investigates liver and lung organotropism in primary PDACs.
      R
      •
      MIT License
      •0•4•0•0•Updated Aug 15, 2025Aug 15, 2025

    • Durva_SBRT

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • fresh_vs_frozen_comparison

      Public
      Jupyter Notebook
      •
      MIT License
      •1•6•0•0•Updated Feb 28, 2025Feb 28, 2025

    • AFM-STIntegration

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

    • Wilms-tumor

      Public
      This preclinical study investigates the difference between treatment-naive and neoadjuvant chemotherapy-treated patients with Wilms tumors.
      MIT License
      •1•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • Dormancy

      Public
      Analysis of single cell immune-sorted data for Hsiang-Hsi's project studying dormancy
      R
      •
      MIT License
      •1•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • LKB1_CIN

      Public
      This repository consists of scripts used for analyzing the LKB1_CIN project.
      Jupyter Notebook
      •0•1•0•0•Updated Sep 4, 2024Sep 4, 2024

    • cGAS-STING

      Public
      MIT License
      •1•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • sarcoma-sn

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • NSCLC_study

      Public
      Non-small cell lung cancer multi modal analysis (single nuclei, tcr, lpWGS, spatial)
      Jupyter Notebook
      •4•8•0•0•Updated Aug 4, 2024Aug 4, 2024

    • Melanoma_Brain_Metastasis

      Public
      Jupyter Notebook
      •
      MIT License
      •10•8•0•0•Updated May 25, 2023May 25, 2023

    • KINOMO

      Public
      R
      •2•4•0•0•Updated Dec 21, 2022Dec 21, 2022

    • CUIMC-NYP_COVID_autopsy_lung

      Public
      R
      •
      MIT License
      •21•45•0•0•Updated May 3, 2021May 3, 2021
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